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From 08/17/2009 to 09/15/2009

09/16/2009

11:41 PM Bug #4390 (Resolved): Semantic Type tag deletion does not remove component from Ontology in the component library
When I open a workflow that has a semantic type in the WRP suite I see the semantic type at the top of the window wit... Aaron Aaron

09/15/2009

12:40 PM Bug #4388: remove the ptII module
Yes, ppod is a "module" with no source code (what I call a "suite"), just a description.txt and a modules.txt in modu... Timothy McPhillips
12:20 PM Bug #4388: remove the ptII module
I think that would now be "ant change-to -Dsuite=ptolemy". Putting the module-info directory in a non-standard locati... Sean Riddle
12:14 PM Bug #4388: remove the ptII module
I'm sorry, but I'm a little confused. I thought ptII was a suite meant to enable Kepler developers to run Ptolemy fr... Timothy McPhillips
12:05 PM Bug #4388: remove the ptII module
Why can't we just create module-info as a top level directory in Ptolemy?
Otherwise, I object to deleting the ptII d...
David Welker
11:09 AM Bug #4388: remove the ptII module
I think ptII/adm/kepler/module-info would work fine. I'll have to take a look at the build system to see how to chan... Chad Berkley
11:06 AM Bug #4388: remove the ptII module
Ah, right, the module-info directory.
This could go in ptII/adm/kepler/module-info.
adm is not shipped as part of the...
Christopher Brooks
10:50 AM Bug #4388: remove the ptII module
The ptII module actually does provide functionality. It contains the metadata needed to build ptolemy successfully. ... Chad Berkley
10:40 AM Bug #4388 (Resolved): remove the ptII module
Now that the copy of Top.java has been removed, the ptII module should
be removed as it contains no .java files and ...
Christopher Brooks
12:35 PM Bug #4324: ptII/module-info/revision.txt not being updated
Excellent. For whatever reason, the cron job on Pantara was not running. Hopefully this works. David Welker
12:28 PM Bug #4324: ptII/module-info/revision.txt not being updated
I created a script that lives on code.kepler-project.org (ceres) to do this. It is set to run in a cron job every da... Chad Berkley

09/14/2009

11:08 AM Bug #4335: Component Library icons do not show correctly after searching
Fixed Aaron Aaron

09/11/2009

02:01 PM Bug #4246: Reorganize code in util, core and gui modules
Have now moved all of the jars from common and util that can be moved. The easy parts of this bug is now done, in th... Chad Berkley
10:45 AM Bug #4246: Reorganize code in util, core and gui modules
Added this page:
https://kepler-project.org/developers/teams/framework/module-reorganization-summary
Need to track ...
Chad Berkley
10:43 AM Bug #4150: Save in Library broken
Following my procedure in comment #3, I can now find a folder with an entry for the actor beneath it without relaunch... Derik Barseghian
09:16 PM Bug #4150: Save in Library broken
So after adding a LocalRepository and clicking on OK in the component preferences tab. The entire library gets rebui... Aaron Aaron
10:42 AM Bug #4282: Duplicate of ptolemy.gui.Top
I've removed all of my changes from yesterday and I have not re-added Top.java to the ptII module, so this bug is eff... Chad Berkley
09:48 AM Bug #4282: Duplicate of ptolemy.gui.Top
That sounds good to me. Chad Berkley
07:05 PM Bug #4282: Duplicate of ptolemy.gui.Top
Absent any objections, I will implement the following solution:
Let's remove the ability to change to Ptolemy from t...
David Welker
10:41 AM Bug #4382 (Resolved): Remove switching between kepler and ptolemy
From bug 4282:
Absent any objections, I will implement the following solution:
Let's remove the ability to cha...
Chad Berkley
10:31 AM Bug #4381 (Resolved): Open KAR: needs to work when opening from outside the /workflows directory
I'm noticing that the workflow is opened, but that the LSID is changed even if i do not make any changes to the workf... ben leinfelder
10:27 AM Bug #3948: Create new configuration system supporting modules
After looking at Matt's UML diagram (https://code.kepler-project.org/code/kepler-docs/trunk/teams-and-wg/2-infr-teams... Chad Berkley
09:28 PM Bug #4380 (Resolved): Removing LocalRepository does not remove actors from Ontologies
scenario:
place a kar containing a component that has a semantic type in a folder
add that folder as a local reposi...
Aaron Aaron

09/10/2009

02:53 PM Bug #4282: Duplicate of ptolemy.gui.Top
I've removed my changes to Top.java in ptolemy and commented out the configuration option in kepler. There is no way... Chad Berkley
01:45 PM Bug #4282: Duplicate of ptolemy.gui.Top
ptolemy.gui cannot depend on ptolemy.actor because Ptplot uses
ptolemy.gui.Top and does not ship with ptolemy.actor.
...
Christopher Brooks
01:05 PM Bug #4282: Duplicate of ptolemy.gui.Top
I added a configuration parameter called _alternateTopHandler into the configuration. This defines a class to overri... Chad Berkley
02:26 PM Bug #4379: PreferencesFrame can be opened multiple times
Added a singleton class called PreferencesTracker to determine if a PreferenceFrame is currently open. PreferencesAc... Aaron Aaron
02:16 PM Bug #4379 (Resolved): PreferencesFrame can be opened multiple times
It is currently possible to open up several PreferencesFrame objects by repeatedly clicking the source button on eith... Aaron Aaron
11:46 AM Bug #4372: demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
I added instructions on how to get the outreach module and changed
the demo links to point to the demos in the outrea...
Christopher Brooks
05:16 PM Bug #4362: component search performance
Yeah seems like this could be improved quite a bit. The OntLibrarySearcher class does the heavy lifting. I added a ... Aaron Aaron

09/09/2009

12:53 PM Bug #4372: demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
Would be nice to package demos in a KAR file (named demos.kar perhaps) and include them in the kar folder of their re... Aaron Aaron
12:41 PM Bug #4372: demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
most demos are now in the 'outreach' module (outreach/resources/demos/getting-started, for example)
the R demos are i...
ben leinfelder
10:21 AM Bug #4372 (Resolved): demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
I have some visitors today and would like to show off the
devel version of Kepler.
When I start kepler, the page ...
Christopher Brooks
12:20 PM Bug #4373 (Resolved): Copyright Statements are Inconsistent
The copyright statement on Java files says "... the following two paragraphs appear ...". But some of the copyrights... Aaron Aaron
11:07 AM Bug #4314: exception when searching ecogrid
The bug was fixed after removing the hosts which are down. Jing Tao
05:02 PM Bug #4314: exception when searching ecogrid
The reason is that some services, e.g. digir service and local service, are down. When I change their default value, ... Jing Tao
09:26 AM Bug #4371: pipe highlighting under "Animate at Runtime"
This would be nice to do some day. I'm changing it to an enhancement.
Bert looked at highlighting links between act...
Christopher Brooks
08:47 AM Bug #4371 (New): pipe highlighting under "Animate at Runtime"
Understanding of complex work-flow execution would be easier if the pipeline (connectors) as
well as the actors were...
simon allfrey

09/08/2009

04:26 PM Bug #4150: Save in Library broken
ah the problem here is just that a folder doesn't get added to the library when you create a new local repository Aaron Aaron
04:03 PM Bug #3672: Open/Save Workflow as KAR Archive
works now Aaron Aaron
03:25 PM Bug #4370 (Resolved): Changes to Components and Data Preferences disappear on relaunch
If you click on the Sources button and change settings beneath Components or Data, these changes are gone after you q... Derik Barseghian

09/04/2009

03:17 PM Bug #4247: Application menu items sometimes disappear on OS X
Whoops - that thread does discuss showMessageDialog, but my test was to showConfirmDialog. So this likely works for b... Derik Barseghian
03:13 PM Bug #4247: Application menu items sometimes disappear on OS X
Found mention of this on the internet, not sure if it's been resolved. I tried the workflow-around mentioned (don't p... Derik Barseghian
12:34 PM Bug #4357: Workflow Run Manager does not mark last failed execution red
should be fixed by r20571 for the most part.
Leaving open since might still be a problem when using PN - see bug depe...
Derik Barseghian
11:17 AM Bug #4150: Save in Library broken
This didn't work for me:
- add and select a local repo for Save and Search
- customized an Rexpression actor
- righ...
Derik Barseghian
10:51 AM Bug #4369: Folder creation when saving a KAR
It is now detecting and creating the folder, but still throws a stacktrace for some reason. Need to debug this furth... Aaron Aaron
10:50 AM Bug #4369 (Resolved): Folder creation when saving a KAR
When saving a KAR file, if the user uses the "New Folder" button to save a kar into a subdirectory of a folder that e... Aaron Aaron

09/03/2009

04:20 PM Bug #3220: "Save" from TextEditor interferes with workflow save-before-closing prompt
Ben can you check in this patch? I can't figure out how to check files into the Ptolemy svn repo. Thanks Aaron Aaron
04:19 PM Bug #4344: Open Workflow from library
You can do this now Aaron Aaron
04:17 PM Bug #4278: Changes to a reopened KAR are not saved to the new KAR
yes this is ok now in the kepler suite Aaron Aaron
04:16 PM Bug #4150: Save in Library broken
seems to work for me in the kepler suite Aaron Aaron
02:12 PM Bug #4363 (New): wrm does not properly handle ModelReference actor
The ModelReference actor runs externally defined workflows. This currently breaks some functionality in the wrm:
*...
Daniel Crawl
05:38 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
One way to sometimes get this to occur seems to be quitting kepler immediately after clicking ok in the delete runs d... Derik Barseghian

09/01/2009

01:50 PM Bug #4355: unexpected workflow appears in provenance after WRM run deletion
Fixed in r20503. Derik Barseghian
06:47 PM Bug #4355: unexpected workflow appears in provenance after WRM run deletion
I've fixed this locally, but want to run it by dan before check-in. Derik Barseghian
01:27 PM Bug #4362 (Resolved): component search performance
For awhile now I've noticed the first search of the library has become much slower than it used to be, subsequent sea... Derik Barseghian
11:58 AM Bug #4242: Report Designer - PC issue - Improve the cursors.
This has been improved, but could still use some further consideration after the 2.0 release. debi staggs
11:56 AM Bug #4277: Report Designer - Add drop down selection list to the properties table.
This is currently working as planned. debi staggs
11:50 AM Bug #4361: Workflow Run Manager column "Workflow Name" can be confusing
I've run across this in the past; I agree it's confusing. When a user runs a workflow they expect the workflow name t... Derik Barseghian
08:40 PM Bug #4361: Workflow Run Manager column "Workflow Name" can be confusing
These naming issues are at least partly due to the change from saving plain XML files to saving KAR files that wrap t... Matt Jones
07:44 PM Bug #4361: Workflow Run Manager column "Workflow Name" can be confusing
What are the constraints, between those two names, i.e. (1) the filename, and (2) the workflow name as specified in t... Bertram Ludaescher

08/31/2009

04:41 PM Bug #4361 (New): Workflow Run Manager column "Workflow Name" can be confusing
This is a general problem with workflow naming that seems to come up here. Consider two of the attachments to http:/... Oliver Soong
04:33 PM Bug #4360 (New): Kepler gets slow under XP
I've been holding off on this, because it's hard to demonstrate, OS-specific, and quite difficult to debug, but it's ... Oliver Soong
04:22 PM Bug #4359 (Resolved): Model Reference causes String index out of range error in variable setter
I wanted to use the model reference actor. It was suggested to use the Variable Setter actor to put port data into a... Oliver Soong
03:15 PM Bug #4358 (New): variable setter seems to lock Kepler in the wrapping up stage of a workflow
Running the attached workflow seems to cause Kepler to freeze at Wrapping Up. I'm not sure if I just need to wait (f... Oliver Soong
03:03 PM Bug #3672: Open/Save Workflow as KAR Archive
I just tried a Save as KAR then Open KAR and got a ClassCastException: looks like we're expecting a KarEntry (a subcl... ben leinfelder
02:41 PM Bug #4357 (Resolved): Workflow Run Manager does not mark last failed execution red
The workflow run manager is supposed to highlight failed executions in red. If I run a workflow and it fails, though... Oliver Soong
01:05 PM Bug #4355 (Resolved): unexpected workflow appears in provenance after WRM run deletion
Unexpected Unnamed1 workflow show up after run-deletion via WRM.
To reproduce:
1) launch kepler using wrp suite
...
Derik Barseghian
11:46 AM Bug #4354 (New): Enable the build system to work on multiple SCM systems.
The build system currently does many tasks using SVN. However, it is possible that in the future we may want to suppo... David Welker
11:26 AM Bug #4353 (Resolved): Update publishing to allow for patches.
It needs to be possible to patch modules deployed in the field. Such patches should be installed by default (i.e. a p... David Welker

08/29/2009

12:57 PM Bug #4282: Duplicate of ptolemy.gui.Top
FYI, I've updated the loader so you can start Ptolemy from the command line:
./kepler.sh -vergil [model.xml]
Daniel Crawl
02:18 AM Bug #4282: Duplicate of ptolemy.gui.Top
For instructional and educational purposes I found it useful to be able to switch to Ptolemy from Kepler, not least b... Bertram Ludaescher
02:31 AM Bug #4351 (Resolved): ant netbans fails due to missing file
During ant netbeans, exveption is thrown:
[netbeans] java.io.FileNotFoundException: /home/michalo/kepler/build-are...
Michal Owsiak
01:00 AM Bug #4350 (Resolved): Integrity constraint violation - no parent SYS_FK_59 table - during _first_ startup
During Kepler startup - from Eclipse project, following error occurs.
NOTE! This error occurs during first start-u...
Michal Owsiak

08/28/2009

04:36 PM Bug #4348: Metacat authenticated query is case sensitive, unauthenticated is not
actually - i'll go ahead and mark this as fixed since only the server portion of the ecogrid needs to be redeployed -... ben leinfelder
04:30 PM Bug #4348: Metacat authenticated query is case sensitive, unauthenticated is not
This is actually a modification in the seek/ecogrid project.
I've made the change to the the XSLT that generates te m...
ben leinfelder
01:15 PM Bug #4348 (Resolved): Metacat authenticated query is case sensitive, unauthenticated is not
This is just confusing. The unauthenticated query is not case sensitive (kruger and Kruger both return the same 37 r... Oliver Soong
04:31 PM Bug #4087: No reset/x button to clear component searches
It's like having a play/pause button on a music player. Stopwatches usually have a start/stop button. In my mind, i... Oliver Soong
03:40 PM Bug #4087: No reset/x button to clear component searches
Hi Oliver, off the cuff having a search button that does both search and cancel doesn't feel right to me. I see how i... Derik Barseghian
03:46 PM Bug #4349 (Resolved): clicking Cancel after Data search gives errors.
If you search for aphid on the Data tab, click Cancel on all the pop-up dialogs (there are other bugs here), and then... Derik Barseghian
12:49 PM Bug #4248: export dialogs should show default extension
fixed in r20488 Derik Barseghian
10:54 AM Bug #4323: Add the "send to back" menu to kepler
I've enabled the Bring to Front and Send to Back menu items for actors and attributes.
I tried it for directors, bu...
Daniel Crawl
10:25 AM Bug #4010: RExpression2 - tracking for backwards compatibility
all the objects are removed when the next R actor starts to [re]use the "R engine" so only objects sent through token... ben leinfelder
05:55 PM Bug #4010: RExpression2 - tracking for backwards compatibility
One question that I'm not sure of. Are created variables being cleaned between instances of R? Variable passing sho... Oliver Soong
05:06 PM Bug #4345: KAR/Module documentation
https://kepler-project.org/developers/teams/framework/kepler-archive-kar/questions-and-answers Aaron Aaron

08/27/2009

04:58 PM Bug #4010: RExpression2 - tracking for backwards compatibility
That works! ben leinfelder
04:42 PM Bug #4010: RExpression2 - tracking for backwards compatibility
Yup. It should parse and eval the file in .GlobalEnv as if it were typed in interactively. I don't think we need an... Oliver Soong
04:00 PM Bug #4010: RExpression2 - tracking for backwards compatibility
just:
source(filename)
you think?
ben leinfelder
03:56 PM Bug #4010: RExpression2 - tracking for backwards compatibility
With regards to Comment #5, why not just write the script to file, then have JRI eval a source command. R will handl... Oliver Soong
02:06 PM Bug #4010: RExpression2 - tracking for backwards compatibility
Testing JRI with the SANParks TPC workflows. Because of how the R code is sent to JRI and executed, we have to do som... ben leinfelder
03:52 PM Bug #1750: Allow KAR files to include jar/class files
Currently evaluating the necessity of this based on further documentation and group discussion. Aaron Aaron
08:58 AM Bug #1750: Allow KAR files to include jar/class files
Seems this is a long standing issue that requires further discussion.
Any pointers to design documents or similar?
...
Bertram Ludaescher
02:57 PM Bug #4299: Kepler needs to be evaluated to determine when native (AWT) widgets would be preferable to Swing widgets.
major gui changes postponed to after 2.0. Daniel Crawl
02:57 PM Bug #4347 (Resolved): Reminder "bug" for manual testing before 2.0 release
Before release, we should devote some time for manual testing--e.g. test some other developer's area of Kepler, looki... Derik Barseghian
02:55 PM Bug #4295: Create advanced toolbar support.
major gui changes postponed to after 2.0. Daniel Crawl
02:11 PM Bug #4346 (Resolved): Searching for Saved Archive (KAR) workflow in default workflow folder gives error
If I make a workflow, then Save Archive (KAR) and save it into a kar (giving it some semantic type) into the new defa... Derik Barseghian
02:04 PM Bug #4345 (Resolved): KAR/Module documentation
need to document exactly what a module is and what a KAR is and how they relate
-- can a KAR go in a module, or vic...
Aaron Aaron
01:29 PM Bug #4344 (Resolved): Open Workflow from library
Currently you can open a KAR file by right clicking on it in the library and opening it. Also want to be able to ope... Aaron Aaron
10:57 AM Bug #4343 (Resolved): remove the full screen button
The full screen button on the toolbar does nothing and should be removed before the 2.0 release.
Bug 2369, comment...
Daniel Crawl
10:28 AM Bug #4282: Duplicate of ptolemy.gui.Top
"Being able to invoke vergil from the build system is separate functionality
from being able to invoke the module man...
David Welker
10:21 AM Bug #4282: Duplicate of ptolemy.gui.Top
Though overrides are not technically "bugs," they do represent the potential for many true bugs in the future. We ha... Chad Berkley
09:47 AM Bug #4282: Duplicate of ptolemy.gui.Top
Being able to invoke vergil from the build system is separate functionality
from being able to invoke the module mana...
Christopher Brooks
09:33 AM Bug #4282: Duplicate of ptolemy.gui.Top
Christopher -
An override is not a bug. That you entered it into Bugzilla does not change that.
You may be right (...
David Welker
09:00 AM Bug #4282: Duplicate of ptolemy.gui.Top
The point is that the duplicate version of Top is a bug that was added
for functionality that no one uses, which is t...
Christopher Brooks
05:14 AM Bug #4282: Duplicate of ptolemy.gui.Top
A hook allowing the extension of ptolemy rather than an override is fine.
I think I was more responding to the view ...
David Welker
11:27 PM Bug #4282: Duplicate of ptolemy.gui.Top
The functional changes needed in Top should just be refactored as extensions to the existing Top so that they can coe... Matt Jones
07:16 PM Bug #4282: Duplicate of ptolemy.gui.Top
(In reply to comment #1)
> Get rid of override in ptII
>
I am not sure what the substance of this reply is. I think...
David Welker
06:50 PM Bug #4292: Menu items should display the same icon as buttons with the same functionality.
Will the 2.0 config system allow this to be done in 2.x.y, or does this sound more like a 3.0 feature?
Bertram Ludaescher
06:43 PM Bug #4310: ValueListeners receive valueChanged events when values have not changed
getValueAsString sounds like a "read only" activity, so I understand that a "valueChanged" event is a surprise, if no... Bertram Ludaescher
06:27 PM Bug #4316: re-evaluate how kars are managed in the build and runtime
Can someone post here a link to any further documentation about how the "KAR system" is supposed to work? Then we cou... Bertram Ludaescher

08/26/2009

04:52 PM Bug #4342 (Resolved): apple-extensions module on windows make Eclipse build difficult
on windows
check out a fresh kepler suite
do an "ant eclipse" command
import modules to eclipse (except for the ap...
Aaron Aaron
04:26 PM Bug #4320: Component Library Folders and Popup Menus
Look, it's different now, if a delete function worked when everything was stored in the database then it's probably n... Aaron Aaron
04:18 PM Bug #4320: Component Library Folders and Popup Menus
Kepler used to have at least some of these functions, such as the ability to delete a component from the Library. Se... Matt Jones
04:14 PM Bug #4150: Save in Library broken
Evaluate whether there are any issues getting actors to save as KAR and show up in Library. If not, close this bug. Matt Jones
04:10 PM Bug #4321: Semantic types on workflows saved into library not searchable
This problem is a regression from previous functioning behavior, likely related to changes in how the library indices... Matt Jones
04:06 PM Bug #4330: common/resources/configurations/config.xml gets modified during build or run
This should get fixed when the configuration system gets reworked. Chad Berkley
03:59 PM Bug #4104: Need resource manager to handle objects in the resources directories
It's pretty easy to get resources from the resources directory right now, so this could be revisited when we talk abo... Chad Berkley
03:58 PM Bug #4334: Rename actor from canvas
Opening the 'Rename' dialog before saving the KAR is not mandatory. Aaron Aaron
03:42 PM Bug #4334: Rename actor from canvas
I agree with Derik that we need to normalize this user experience so that saving uses the familiar paradigm. Having ... Matt Jones
03:03 PM Bug #4334: Rename actor from canvas
Isn't popping up a Save As dialog when a file has never been saved and still has a default name normal and expected? ... Derik Barseghian
01:49 PM Bug #4334: Rename actor from canvas
This is an enhancement, though I understand that some might see the extra
dialog box that is popped up as a bug.
Christopher Brooks
11:34 AM Bug #4334 (Resolved): Rename actor from canvas
Add "Configure Name" right-click functionality to canvas. This allows a user to change the default name of a workflo... Aaron Aaron
03:54 PM Bug #4341 (New): rearrange the actors module into smaller modules
I'll create a list of proposed modules for the actors currently all lumped together in the actors module. The new mo... Chad Berkley
03:37 PM Bug #4056: create developer documentation for svn configuration.
Moving the documentation of the problem to post 2.0.0 is fine, but
if you ship 2.0.0 under Linux, then it looks like ...
Christopher Brooks
03:19 PM Bug #4056: create developer documentation for svn configuration.
This is a documentation problem where we need to improve developer documentation to instruct people to use an svn con... Chad Berkley
03:30 PM Bug #4316: re-evaluate how kars are managed in the build and runtime
Several people do not think that kars should be checked into SVN so there needs to be a discussion amongst stake hold... Chad Berkley
03:28 PM Bug #4247: Application menu items sometimes disappear on OS X
I am able to reproduce this bug following the steps in comment #4 (on my mac). Daniel Crawl
02:07 PM Bug #4247: Application menu items sometimes disappear on OS X
Derik, could you repro this bug on a different machine than your mac? If so, could you recomment here and tell us ho... Chad Berkley
03:13 PM Bug #3801: open dialog, common places pane has white box instead of text
moving to 2.x.y because fixing 4282 will handle most of the problems. fix the gui problems after the 2.0 release. Chad Berkley
03:13 PM Bug #3801: open dialog, common places pane has white box instead of text
Fixing 4282 will fix this bug. Chad Berkley
03:12 PM Bug #4273: Ctrl+E operates on mouse position, not selection
I just tried it and it happens to me too, using head, on both mac and linux. Derik Barseghian
03:08 PM Bug #4273: Ctrl+E operates on mouse position, not selection
Verify this. If it is a bug, look into the ptolemy handler that handles this event. Chad Berkley
03:12 PM Bug #4282: Duplicate of ptolemy.gui.Top
Get rid of override in ptII Chad Berkley
02:58 PM Bug #4285: workflow canvas does not repack to fill empty space when top window is resized
Verify which jvm/window manager/OS this occurs on. Have not seen this on windows or OSX. If this is not widespread ... Chad Berkley
02:52 PM Bug #4324: ptII/module-info/revision.txt not being updated
The revision.txt file needs to be updated each night if the ptII build succeeds. I was under the impression that thi... Chad Berkley
02:52 PM Bug #4310: ValueListeners receive valueChanged events when values have not changed
Calling getValueAsString on Distributor.input_tokenConsumptionRate always generates a value changed event. Daniel Crawl
02:26 PM Bug #4310: ValueListeners receive valueChanged events when values have not changed
The implications for this are not clear. Sounds like it is a serious bug that should be fixed, but we need a more de... Matt Jones
02:49 PM Bug #4292: Menu items should display the same icon as buttons with the same functionality.
Moving GUI enhancements to 2.x.y Chad Berkley
02:48 PM Bug #4333: KeplerLSID AuthNamespace web service
This should be installed and maintained as part of the kepler repository. This functionality should be added to that... Chad Berkley
11:16 AM Bug #4333 (Resolved): KeplerLSID AuthNamespace web service
Currently Kepler is pinging my desktop machine to get a unique authority and namespace. We should create a more robu... Aaron Aaron
02:44 PM Bug #4340 (Resolved): Resolve KAR file/module format
We need to resolve the differences between the KAR file format and the module format because we have two different wa... Chad Berkley
02:43 PM Bug #4294: Kepler should meet established accessibility guidelines.
Moving GUI upgrades to 2.X.Y. Matt Jones
02:39 PM Bug #4314: exception when searching ecogrid
Verify this is still happening, close this bug if not. Chad Berkley
02:36 PM Bug #4311: Build system appears to lock if there is a conflict upon update
Conflicts are common when multiple people work on a file. This needs to get fixed for 2.0. Need to provide a way f... Matt Jones
02:34 PM Bug #4281: ant update produces message about running svn cleanup
This happens on any platform when SVN doesn't complete an operation successfully and leaves the working copy in a loc... Matt Jones
02:28 PM Bug #4219: "Kepler Repositories" should be retrieved from the registry
This can be done via an upgrade to the ecogrid module and so should be able to be handled in a module-specific releas... Matt Jones
02:23 PM Bug #4287: Separate user error messages from developer error messages.
Pushing to 2.x.y when we will make other gui changes. Chad Berkley
02:22 PM Bug #2493: actor repository tracking bug
Need to verify that saving to the repository is working seamlessly for both Uploading components and workflows, as we... Matt Jones
02:18 PM Bug #3672: Open/Save Workflow as KAR Archive
Import/Export of KARs is now really the Save function, so should be named as such in the menus. Plus complete items ... Matt Jones
02:16 PM Bug #4312: Clicking cancel on "sure you want to exit" dialog exits anyway
This bug can cause you to lose your workflow if you accidentally quit kepler, then try to cancel quitting. Chad Berkley
02:05 PM Bug #4338: need to review usability and gui of module manager
We also need to check to make sure that the module manager can successfully upgrade existing modules without breaking... Chad Berkley
01:32 PM Bug #4338 (Resolved): need to review usability and gui of module manager
The module manager is complete and functioning, but has not been reviewed by the broader community. Because it is a ... Matt Jones
02:01 PM Bug #4179: ant jar does not include configs/
Ptolemy requires configs to be at the root in the common module. In general we want all resources like configs to go... Matt Jones
01:52 PM Bug #4339 (New): build system needs to provide more information on modules
The build system has a 'describe' task that will svn cat the description.txt file of any module. This is a good star... Chad Berkley
01:35 PM Bug #4246: Reorganize code in util, core and gui modules
add a page to the wiki to describe the new module structure and what packages/functionality go into which module. Chad Berkley
09:07 AM Bug #4246: Reorganize code in util, core and gui modules
newly created modules from util module classes:
data-handling
ssh
io
job
component-library
repository
Chad Berkley
01:18 PM Bug #3898: update .kepler instead of removing it between versions
Progress has been made, but there's still work to be done. There are two main directories in which things can be sto... Matt Jones
01:10 PM Bug #4337 (Resolved): 1.0 -> 2.0 upgrade issues tracking bug
We need to come up with a set of issues to handle the upgrade between kepler 1.0 and kepler 2.0. The upgrade path sh... Chad Berkley
01:01 PM Bug #1750: Allow KAR files to include jar/class files
This issue needs clarification as to why the module format and the kar format need to be separate. It seems that bot... Chad Berkley
12:50 PM Bug #3948: Create new configuration system supporting modules
This bug now focuses exclusively on creating a new configuration system for
managing configuration properties. It do...
Matt Jones
12:46 PM Bug #4336 (Resolved): Merge the old configuration systems
Migrate existing configuration files to use the new configuration system described in bug 3948. Functionality should... Chad Berkley
11:42 AM Bug #4335 (Resolved): Component Library icons do not show correctly after searching
The icons in the component library do not show up correctly after searching for a component. This seems to be a prob... Aaron Aaron

08/25/2009

01:45 PM Bug #4330 (Resolved): common/resources/configurations/config.xml gets modified during build or run
common/resources/configurations/config.xml
gets modified at some point in the build or run.
module directories ar...
Aaron Aaron
11:50 AM Bug #3898: update .kepler instead of removing it between versions
Rick Moore writes:
Turns out that DBConnectionFactory gets it's path from DotKeplerManager. Here are the files/lines...
Christopher Brooks
11:27 AM Bug #3898: update .kepler instead of removing it between versions
This bug was discussed in kepler-users:
Ben Leinfelder writes:
> Rick,
> The path is specified in DBConnectionFacto...
Christopher Brooks
05:58 PM Bug #4302: display actor window does not rename
I fixed this.
Note that the Plotters, the MatrixViewer and the InteractiveShell all
had similar issues.
My solution ...
Christopher Brooks
05:57 PM Bug #4302: display actor window does not rename
This bug can be reproduced in Ptolemy. I'm lowering the priority slightly
and about to fix it.
Christopher Brooks

08/24/2009

11:27 AM Bug #4197: Waterflow TPC demo - tracking bug
now using OrderedRecordTokens and OrderedRecordAssembler to do things "correctly" (no ptolemy overrides) ben leinfelder
10:02 AM Bug #4246: Reorganize code in util, core and gui modules
Forgot to mention in the last comment that I also created a opendap module for the opendap functionality. Other modu... Chad Berkley

08/22/2009

06:23 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
Now I'm unable to reproduce the error from the procedure in comment #2, even though I'd done it a few times. Maybe so... Derik Barseghian
06:08 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
If you:
- Launch Kepler
- Run a workflow twice.
- Export the 2nd run.
- Delete the 2nd run
- Close and relaunch, the ...
Derik Barseghian
05:53 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
Also: If instead of deleting the third run, you delete the second run (the one you exported), and then close and rela... Derik Barseghian

08/21/2009

04:33 PM Bug #4132: Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
I remembered why I've been punting on this: the dependency issues. When opening a run via the workflow-run-manager, i... Derik Barseghian
11:54 AM Bug #4328 (New): change-to command checks out across branches
If kepler is currently in a branch, the change-to command should not update from the trunk. Once a branch is selecte... Chad Berkley
10:48 AM Bug #4327 (New): Workflow Run Manager - ability to import run archives
Workflow Run Manager needs ability to import archives.
For example:
User A runs a few workflows a few times, export...
Derik Barseghian
10:42 AM Bug #4246: Reorganize code in util, core and gui modules
Did a major reorg of util. Created 4 new modules: ecogrid, gui, authentication and authentication-gui. Moved most, ... Chad Berkley
02:49 AM Bug #4326 (Resolved): External Executor actor puts out an extra token when nonzero return
If you have a external execution actor with PN director, and the external execution actor calls a script, say...
#...
Tirath Ramdas
06:49 PM Bug #4136: Workflow Run Manager - date and duration search should allow single operator-less arguments
Changing this to an enhancement request -- single operator-less queries are disabled so user can no longer get these ... Derik Barseghian
05:18 PM Bug #4231: Workflow Run Manager - failed runs should be highlighted red
All errors for an execution are now placed in the WorkflowRun class. The serialized form probably needs to be improve... Derik Barseghian
05:14 PM Bug #4325 (Resolved): Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
To reproduce:
- Launch Kepler
- Run a workflow twice.
- Export the 2nd run.
- Run the workflow again.
- Delete t...
Derik Barseghian
05:11 PM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
Going to open a new bug for issue in #5, closing.
Derik Barseghian

08/20/2009

03:51 PM Bug #3925: ant run does not always work from paths with spaces
I think this actually got fixed some revision in the past. At least, it works for me now. Oliver Soong
12:02 PM Bug #4324 (Resolved): ptII/module-info/revision.txt not being updated
The bug is that ptII/module-info/revision.txt has not been updated since
August 3. The problem is that the Kepler t...
Christopher Brooks

08/19/2009

10:49 AM Bug #4246: Reorganize code in util, core and gui modules
Util module todos:
-Move ecogrid classes to their own module. This includes org.ecoinformatics.seek.ecogrid.*, org....
Chad Berkley

08/18/2009

04:17 PM Bug #4319: LibraryManager
I could easily be wrong about this and it could be a bug.
However, it is worded like an enhancement. To me, a bug is...
Christopher Brooks
12:22 PM Bug #4319: LibraryManager
The bug here was just poor API design (or more likely an unfinished API). The library was dependent solely on the li... Aaron Aaron
07:47 AM Bug #4319: LibraryManager
This looks interesting, though it seems to be a feature request?
There could be a bug here, it should be stated more ...
Christopher Brooks
03:18 PM Bug #4002: RExpression2 - handle arbitrary R data structures
tests the various structures are transferred by the JRI implementation. ben leinfelder
03:14 PM Bug #4002: RExpression2 - handle arbitrary R data structures
in the example cases given, all but the structure produced by ~ were transferred from one R actor the the other.
Thi...
ben leinfelder
02:46 PM Bug #4278: Changes to a reopened KAR are not saved to the new KAR
Also tried saving the modified workflow to a different .kar file, but the changes are still lost when i open the new ... ben leinfelder
01:27 PM Bug #4246: Reorganize code in util, core and gui modules
Removed the last gui class from core. Now moving on to reorganize util. Hopefully will move all gui classes into th... Chad Berkley
12:49 PM Bug #4323 (In Progress): Add the "send to back" menu to kepler
Ptolemy has an appearance/send to back menu that is not in kepler. We should add this and similar menus to the keple... Chad Berkley
12:06 PM Bug #4320: Component Library Folders and Popup Menus
Shawn, Kepler's library is now built from KAR files stored on disk in folders referred to as "Local Repositories". T... Aaron Aaron
10:43 AM Bug #4320: Component Library Folders and Popup Menus
Addressing Christopher's comment, I think what this makes this entry "bug-ish" is that the Component Library looks li... Timothy McPhillips
07:57 AM Bug #4320: Component Library Folders and Popup Menus
I think this also assumes components are fundamentally stored on disk, and if stored on disk, in a meaningful place. ... Shawn Bowers
07:45 AM Bug #4320: Component Library Folders and Popup Menus
I think this is a feature request, not a bug.
A bug is behavior of a currently implemented feature that does not work...
Christopher Brooks
11:41 AM Bug #4322: Attempting to save changes to a workflow saved in a KAR file fails
It should prompt you to resave it in the KAR from which it originally came. If you don't want to overwrite that exist... ben leinfelder
11:32 AM Bug #4322 (Resolved): Attempting to save changes to a workflow saved in a KAR file fails
The following fails:
1) Create new workflow
2) Instantiate a Constant actor
3) Right click on canvas and Save Ar...
Sean Riddle
11:25 AM Bug #4321 (Resolved): Semantic types on workflows saved into library not searchable
Assigning semantic types to a workflow is recommended when saving it into a KAR file (where it is then visible in the... Sean Riddle
10:13 AM Bug #4305: Move actor classes into the actors module
All actors in util, common and core have now been moved to the actors module. There are no director classes in keple... Chad Berkley
09:10 AM Bug #4285: workflow canvas does not repack to fill empty space when top window is resized
*** Bug 4297 has been marked as a duplicate of this bug. *** Christopher Brooks
09:10 AM Bug #4297: Kepler needs a new layout manager.
Duplicate of
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4285
*** This bug has been marked as a duplicate of ...
Christopher Brooks
09:08 AM Bug #4297: Kepler needs a new layout manager.
We should follow the Java i18n standard of managing internationalization
strings, see
http://java.sun.com/javase/tech...
Christopher Brooks
09:01 AM Bug #4291: The main menu bar should not change based on the location of focus.
I believe this is a Mac OS X specific bug, so I'm changing the Hardware and OS.
I'm also lowering this in priority be...
Christopher Brooks
08:30 AM Bug #4290: Separate the GUI from the execution engine.
Ptolemy has always made a distinction between the execution engine and
the GUI. Clearly defining any issues in Keple...
Christopher Brooks
08:23 AM Bug #4289: Develop strategy for using assertions in the GUI
Using more assertions, perhaps combined with a speed/safety strategy would be
useful.
I'm marking this as an enhancem...
Christopher Brooks
08:22 AM Bug #4288: Develop GUI error handling strategy.
Having some exceptions that cause immediate failure and some that allow
execution to continue is an interesting resea...
Christopher Brooks
08:08 AM Bug #4287: Separate user error messages from developer error messages.
The way to fix this bug is that each time a nonsensical error message
appears, then we need to know what the stack t...
Christopher Brooks

08/17/2009

02:30 PM Bug #2963: Add data structure for tabular data and associated metadata
I've introduced an OrderedRecordToken to ptolemy - it preserves the original order of the RecordToken.
Unfortunately ...
ben leinfelder
02:15 PM Bug #4037: WRM - connect to Kepler-wide configurable provenance store
Provenance configuration is now using the cache's HSQLDB and is not configurable by a normal user (developers can cha... ben leinfelder
12:09 PM Bug #4320 (Resolved): Component Library Folders and Popup Menus
The Component Library is the most used graphical component in Kepler. It is in essence the "Control Panel" for build... Aaron Aaron
11:52 AM Bug #4319 (Resolved): LibraryManager
The Component library was being built with an Index which made it difficult to dynamically add and remove components ... Aaron Aaron
11:22 AM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
appending "_n" for duplicate Attribute names. ben leinfelder
08:46 AM Bug #4310: ValueListeners receive valueChanged events when values have not changed
We need a test case for this. Christopher Brooks
08:42 AM Bug #4306: add command line params to the configuration
Here's some email about this. Note that adding a separate CommandLineArgs
solution might not work with PN:
Colin wr...
Christopher Brooks
08:37 AM Bug #4306: add command line params to the configuration
Adding another class is not as clean a solution as having this information
in the Configuration. The reason is that ...
Christopher Brooks
08:15 AM Bug #4318: RExpression NA converts to string "nil", not value nil
BTW - the test case should probably be checked in and run
as part of the nightly build so that this bug stays fixed.
...
Christopher Brooks
 

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