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From 11/19/2009 to 12/18/2009

12/19/2009

07:45 PM Bug #4642 (New): memory usage & slowdowns
I just hit a big slowdown caused by OOM problems. This bug is mostly a place to put down some of the stuff I found o... Oliver Soong

12/18/2009

03:18 PM Bug #4639 (New): add support for -Drev to ant change-to
Doesn't happen very often, but I often am not checking out the head revision, and so it would be nice if ant change-t... Oliver Soong
01:54 PM Bug #4630: creating and changing relations don't trigger LSID bump
For now I've allowed manually bumping the LSID revision and Object ID from the LSID Viewer panel so there's at least ... Aaron Aaron
12:19 PM Bug #4599: changing Expression and running problematic workflow generates blank report
Until this gets fixed, a workaround is to give the workflow an LSID from the local Kepler install. Basically, delete... Oliver Soong
12:09 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
This actually looks great right now. It seems to clear all the test cases. Oliver Soong
11:34 AM Bug #4638: ant clean-all no longer works
It works at r22253. Oliver Soong
11:33 AM Bug #4638 (Resolved): ant clean-all no longer works
This is with modules\build-area at r22254. ant clean-all and ant clean-cache both fail:
build-area\build.xml:4: ...
Oliver Soong
08:01 PM Bug #4633: LSID conflicts
The logic for querying a new namespace from an Authority in the event that the recorded object IDs and revisions have... Aaron Aaron
06:47 PM Bug #4514: Files are being saved in the Kepler installation directory
InstanceAuthNamespace now gets saved into the persistent Kepler core module directory. LastObjectID file is no longe... Aaron Aaron

12/16/2009

11:09 AM Bug #4619: WorkflowRuns not showing inside KARs in library
r22211 fixes problem in comment#5. Derik Barseghian
10:57 AM Bug #4630: creating and changing relations don't trigger LSID bump
retargeting to 2.0 ben leinfelder
10:40 AM Bug #4571: report "lost" from KAR
Tried to "loose" the ROML - it just won't go away! Closing... ben leinfelder
07:32 PM Bug #4633: LSID conflicts
LSIDGeneration and LSID Revision updates are now being recorded. The LSID_GENERATOR table still needs to be moved to... Aaron Aaron

12/15/2009

03:25 PM Bug #4578: tracking bug for changes to .kepler
I have removed the use of the AuthNamespace from the .kepler directory structure.
The cache directory is now
~/.kep...
Aaron Aaron
12:15 PM Bug #4587: Assure a clean cache when module configuration changes
I'll work on getting this working. Chad Berkley
11:45 AM Bug #4338: need to review usability and gui of module manager
I tried the MM again from a clean build. I was able to change-to the kepler-1.0.0 suite, however there are some prob... Chad Berkley
08:49 AM Bug #4473: Add WRM to bottom of report viewer for navigation
I'm really liking this the more I interact with it.
I even like how you can "open" a row in a new window if you do wa...
ben leinfelder
05:41 PM Bug #4473: Add WRM to bottom of report viewer for navigation
WRM has been moved to the Report Designer view, which now contains the report designer and the instance viewer in dif... Derik Barseghian
08:47 AM Bug #4468: Report Viewer - message to run workflow first
Since we're not refreshing the viewer when you switch views (now a tab) the only time it comes up is when you use the... ben leinfelder
11:21 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
I've at least addressed some of this in r22198.
I concentrated on editing wf/layout->saving kar->editing->saving.... ...
ben leinfelder
07:44 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
I think I can hopefully clarify the example and maybe help show why this is incredibly confusing:
1. New workflow, ...
Oliver Soong
05:46 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
I should also point out that bug 4571 shows up in cases 4 and 5.
4. Saved KAR, Change MOML, File->Save Archive, clos...
Oliver Soong
04:50 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
This is observed on both r22183 and r22155. Still trying to find a build that won't lose my data... Oliver Soong
11:18 PM Bug #4571: report "lost" from KAR
I believe r22198 will eliminate this problem. You should be able to open different KARs with different versions of th... ben leinfelder
08:37 PM Bug #4630: creating and changing relations don't trigger LSID bump
Creating relations also does not trigger an LSID bump. For some reason, deleting them does. Oliver Soong
08:33 PM Bug #4633: LSID conflicts
This still seems to occur if I'm not using local repositories.
The crux of the problem is nobody is tracking used re...
Oliver Soong
06:09 PM Bug #4633: LSID conflicts
Fixed, lsid updating now recognizes if it is the highest revision in the cache or not. If it isn't then it becomes o... Aaron Aaron
05:04 PM Bug #4633 (Resolved): LSID conflicts
Create a workflow and save a KAR (KAR1). Note the LSID. Change the workflow in some recognizable fashion and save a... Oliver Soong
08:19 PM Bug #4634 (Resolved): run archive causes NPE when building local repository
Start Kepler from a clean-cache. I'm at r22183. Move the example to the default workflows folder and re"Build" the ... Oliver Soong
07:38 PM Bug #4563: components search seems to be broken
This no longer seems to occur. Oliver Soong
07:29 PM Bug #4596: selecting text entry box of report item moves activation highlight but does not update properties window
I think this got fixed, but never re-closed. Oliver Soong
06:40 PM Bug #4619: WorkflowRuns not showing inside KARs in library
r22184 has re-broken this. KARFile now warns:
WARN (org.kepler.kar.KARFile:cache:838) KAREntry was not recognized: W...
Derik Barseghian
05:57 PM Bug #4615: pdfs missing from run archives
This got fixed somewhere along the line (before r22183). Oliver Soong
05:35 PM Bug #4505: NPE from Semantic Search
The error has changed to:
java.lang.ClassCastException: org.kepler.objectmanager.cache.ReportLayoutCacheObject
at o...
Derik Barseghian
05:32 PM Bug #4607: Workflow Run Manager - opening kar no longer adds run-row
This has been fixed. Derik Barseghian
05:32 PM Bug #4590: Workflow Run Manager - Export Archive can give error
This was fixed awhile ago. Derik Barseghian

12/14/2009

03:59 PM Bug #4605: Semantic Annotation NPE
Turns out it was just unable to find the icon, which was crashing the whole thing (not good). Fixed now. Aaron Aaron
03:01 PM Bug #4605: Semantic Annotation NPE
Somehow OntoClassSelectionJPanel is not in the classpath at runtime... It gets used from ActorSemanticTypeEditorPane... Aaron Aaron
03:58 PM Bug #4538: problems with KARs that contain tags from default ontologies
The problem in comment #1 was fixed some time ago.
Things seem to be working fine, but I notice the way the tags are...
Derik Barseghian
03:51 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
Regarding the part about the ROML being lost (second described symptom), it reminds me a lot of bug 4592, but I think... Oliver Soong
03:07 PM Bug #4632 (Resolved): problems when loading a KAR, changing the workflow, then re-saving the KAR
Create a workflow and report and save the KAR. Next, change the workflow (i.e., bump the MOML LSID), save the KAR (o... Oliver Soong
03:10 PM Bug #4338: need to review usability and gui of module manager
turns out it changed my modules.txt to this:
berkley@Slickrock build-area$ more modules.txt
ssh-1.0.0
Chad Berkley
03:10 PM Bug #4338: need to review usability and gui of module manager
I've reviewed the module manager and these are the things I've noticed:
* the window opens too small on OSX. It sho...
Chad Berkley
02:40 PM Bug #4631 (Resolved): Could use some way to change the "workflow name" stored in a KAR
Right now, if I want to change the "workflow name", I would have to export the MOML and recreate the report. It woul... Oliver Soong
02:28 PM Bug #4630 (Resolved): creating and changing relations don't trigger LSID bump
Make a workflow with at least 3 ports and only 2 connected. Check the LSID. Now move a relation from one port to an... Oliver Soong
01:48 PM Bug #4629 (Resolved): Undo doesn't roll LSID revision
When undoing changes in a workflow the LSID of the workflow does not get incremented. Aaron Aaron
01:48 PM Bug #4599: changing Expression and running problematic workflow generates blank report
Still happening at r22183. There might be more to it than the provenance recorder? Oliver Soong
01:24 PM Bug #4468: Report Viewer - message to run workflow first
I think this got killed with some recent commit. I'm at r22183. Oliver Soong
01:22 PM Bug #4569: viewing report before executing sometimes generates persistent blank report
This seems to have been "fixed" somewhere along the way. At the very least, it's not showing up at r22183. I'm not ... Oliver Soong

12/11/2009

08:49 AM Bug #4619: WorkflowRuns not showing inside KARs in library
While unit tests would probably minimize this wheel spinning, I think it's non-trivial to develop them. Most of the i... ben leinfelder
10:27 PM Bug #4619: WorkflowRuns not showing inside KARs in library
Derik -- it sounds to me like you need to develop a set of unit tests that exercise this functionality, in this case ... Matt Jones
07:08 PM Bug #4619: WorkflowRuns not showing inside KARs in library
partially fixed in r22162. You can now export the same run to different kars, and the run momls will show up in the t... Derik Barseghian
06:30 PM Bug #4626: NPE when saying "yes" to adding a semantic type while saving a KAR
duplicate of 4605, although it looks like the error msg may have changed since I reported. Derik Barseghian
06:27 PM Bug #4626 (Resolved): NPE when saying "yes" to adding a semantic type while saving a KAR
I'm at r22155. File->Save Archive (KAR) and answer yes to adding a semantic type. I'm getting an NPE.
Exception ...
Oliver Soong

12/10/2009

07:12 PM Bug #4619: WorkflowRuns not showing inside KARs in library
Leaving off here for now: problem is related to fact that insertEntryIntoCache fails when trying to insert WorkflowRu... Derik Barseghian
06:21 PM Bug #4619 (Resolved): WorkflowRuns not showing inside KARs in library
WorkflowsRuns that are inside kars haven't been showing up in the component library for awhile now beneath an expande... Derik Barseghian
06:16 PM Bug #4618: First export of a run doesn't yield KAR with ROML
r22150 should fix this, but I want to test it a bit more.
One oddity currently is that if you export a run, export it...
Derik Barseghian

12/09/2009

03:45 PM Bug #4614: right click -> Open on an existing run adds an entry to the wrm
r22148 should fix this. I want to test it a bit more before closing though.
Also, I've changed the duration column b...
Derik Barseghian
07:32 PM Bug #4614: right click -> Open on an existing run adds an entry to the wrm
Definitely wrong. It should only insert a new row if the one that's being opened has been deleted from the WRM. Bug h... Derik Barseghian
06:20 PM Bug #4614 (Resolved): right click -> Open on an existing run adds an entry to the wrm
I run a workflow, then right click on its run record and select open. When the new window opens, there is another en... Oliver Soong
03:44 PM Bug #4618 (Resolved): First export of a run doesn't yield KAR with ROML
I've introduce a bug in r22148:
For the case where no report is made: the first export of a run doesn't put a ROML...
Derik Barseghian
06:54 PM Bug #4577: integrate, and separate from save/export, the code for Uploading
oh, I like that - then the gui code never needs to "know" all the different kinds of metadata entry types, just that ... ben leinfelder
06:40 PM Bug #4577: integrate, and separate from save/export, the code for Uploading
A user can now create different types of KARs from within Kepler, and upload them to the repository via context menu ... Derik Barseghian
06:21 PM Bug #4615 (Resolved): pdfs missing from run archives
It's looking like PDFs are no longer found in run archives like they used to be. I'm at r22136. Oliver Soong
06:05 PM Bug #4613: EML 2 Dataset automatically updating to latest package doesn't trigger "workflow change"
It's odd that it does work for, say, the RExpression actor and the "Automatically display graphics" checkbox.
I'm not...
ben leinfelder
05:43 PM Bug #4613 (New): EML 2 Dataset automatically updating to latest package doesn't trigger "workflow change"
I have a saved workflow that uses judithk.40.47 in an EML 2 Dataset actor. It also has "Check for latest version" ch... Oliver Soong
04:03 PM Bug #4599: changing Expression and running problematic workflow generates blank report
Not quite fixed. I still get the blank report. I'm at r22136. Oliver Soong

12/08/2009

03:50 PM Bug #4600: Changing workflow & running causes "execution history not found" message to appear in report viewer
This still happens even after bug 4599 was fixed. Oliver Soong
03:21 PM Bug #4608: ROML in KAR files not being shown at all
This was a problem of the EntryHandlers being deleted from the configuration during conversion to the new Configurati... Aaron Aaron
01:33 PM Bug #4608: ROML in KAR files not being shown at all
I'm going to look into this. ROMLs, RIOs, and WorkflowRuns aren't being put into KARs anymore (at the filesystem leve... Derik Barseghian
01:25 PM Bug #4608: ROML in KAR files not being shown at all
Nevermind, it's actually not in the manifest. Checking into it. debi staggs
01:23 PM Bug #4608: ROML in KAR files not being shown at all
Do you mean that it is not showing up in the Library ? debi staggs
12:17 PM Bug #4608: ROML in KAR files not being shown at all
Oh, and to clarify, 22083 was supposed to fix bug 4512 and 22117 was supposed to fix 4601. Oliver Soong
12:10 PM Bug #4608 (Resolved): ROML in KAR files not being shown at all
ROML in KAR files is not being loaded. This happens regardless of the LSID in the workflow and ROML matching the Ins... Oliver Soong
02:20 PM Bug #4605: Semantic Annotation NPE
I guess since we don't have Tagging in the vanilla Kepler suite, we still need to warn the user if they haven't seman... Derik Barseghian
01:59 PM Bug #4535: exception when initiating the kars of a module whose name include a period.
I am unable to reproduce this bug. This code has changed substantially since this bug was entered. I'm closing it n... Chad Berkley
12:32 PM Bug #4597: adding new configuration properties before/after a certain exiting configuration property.
Added a method addPropertyAtIndex which allows the user to add a property anywhere into an existing ordering of neste... Chad Berkley
12:20 PM Bug #4559: local repositories not showing up in components tree
I think the missing reports are part of a larger problem, which I've filed separately as bug 4608. The other problem... Oliver Soong
10:27 AM Bug #4559: local repositories not showing up in components tree
Fixing bug 4512 solves part of the problem, but some others remain and there are some new ones. I'm still following ... Oliver Soong
10:51 AM Bug #4601: New LSID not propagating to provenance
Fixed. Daniel Crawl
10:51 AM Bug #4599: changing Expression and running problematic workflow generates blank report
Fixed. Daniel Crawl
04:24 PM Bug #4607 (Resolved): Workflow Run Manager - opening kar no longer adds run-row
If you export a run archive to a kar, delete the run row in WRM, and then open this KAR, the run used to be added as ... Derik Barseghian
04:11 PM Bug #4606: Workflow Run Manager - using CAPS in tags search doesn't work
Fixed in r22105. Tags column now behaves like the other columns that use text: it's case insensitive. If people want ... Derik Barseghian

12/07/2009

03:57 PM Bug #4606 (Resolved): Workflow Run Manager - using CAPS in tags search doesn't work
If you tag a run with e.g. Absence, and then use the WRM to search the tags column for "Ab", you don't get any result... Derik Barseghian
03:50 PM Bug #4605 (Resolved): Semantic Annotation NPE
If you File=> Save Achive (KAR), and say yes to semantically annotate it, you get an NPE:
Exception in thread "AWT...
Derik Barseghian
11:43 AM Bug #4336: Merge the old configuration systems
Closing... Chad Berkley
11:42 AM Bug #4336: Merge the old configuration systems
All ptolemy configuration.xml files (that I know about) in kepler (except for the main one in common) have now been r... Chad Berkley
11:03 AM Bug #4604 (In Progress): Make aesthetic changes to tagging interface
Make certain interface enhancements to tagging that are deemed not important enough to block 2.0 or the wrp release w... Sean Riddle
10:58 AM Bug #4603 (Resolved): Make limited changes to tagging in preparation for initial release
Make changes that are either easily done or essential before an initial public release through the new module manager... Sean Riddle
10:31 AM Bug #4513: On the PC the paint transparency for buttons doesn't redraw correctly
This has been corrected. debi staggs
10:30 AM Bug #4402: When a report item is deleted clear the properties window
This has been fixed. debi staggs

12/05/2009

01:19 PM Bug #4512: missing entries with multiple copies of the same KAR file in a single repository
The primary key used for the KARS_CACHED table has been changed to be the full File path for the KAR. So you can now... Aaron Aaron

12/04/2009

02:18 PM Bug #4336: Merge the old configuration systems
Also still need to convert the reporting module. I also missed one property in the ptolemy config. "tabPaneFactory" ... Chad Berkley
01:42 PM Bug #4336: Merge the old configuration systems
removing the 4597 dependency because that doesn't really depend on the configuration conversion. Chad Berkley
01:41 PM Bug #4336: Merge the old configuration systems
All of the kepler specific factory properties have now been removed from the configuration.xml file. I still need to... Chad Berkley
10:18 PM Bug #4601 (Resolved): New LSID not propagating to provenance
This came up as a reporting bug, but that's a symptom if something larger. I'm not sure exactly where the system brea... ben leinfelder
10:11 PM Bug #4599: changing Expression and running problematic workflow generates blank report
Here's the scenario:
1. KAR/Workflow from another Kepler installation is opened - you can run it once and everything ...
ben leinfelder
04:54 PM Bug #4599 (Resolved): changing Expression and running problematic workflow generates blank report
This uses the same workflow in Bug 4598. Open the workflow and change the "Figure Number" Expression from 1 to 12. ... Oliver Soong
05:34 PM Bug #4596: selecting text entry box of report item moves activation highlight but does not update properties window
I should point out this also affects section headers and dynamic report items. Basically, it's anything with a text ... Oliver Soong
04:20 PM Bug #4596: selecting text entry box of report item moves activation highlight but does not update properties window
This is now fixed. Clicking in the text entry area updates the properties window. debi staggs
05:21 PM Bug #4600 (Resolved): Changing workflow & running causes "execution history not found" message to appear in report viewer
This uses the example workflow in bug 4598.
Run the workflow. Change "Figure Number" to 12 and run again. Now vi...
Oliver Soong
05:15 PM Bug #4598: particular workflow triggers "QueryException: No tokens found for execution"
Ben and I have decided this is actually a symptom of bug 4436. Oliver Soong
05:08 PM Bug #4598: particular workflow triggers "QueryException: No tokens found for execution"
The error says reporting 2 lines down. Oliver Soong
04:50 PM Bug #4598 (Resolved): particular workflow triggers "QueryException: No tokens found for execution"
I've tried this on several Windows machines and 1 linux. When I run the workflow, I get this error:
org.kepler.p...
Oliver Soong
04:33 PM Bug #4597 (Resolved): adding new configuration properties before/after a certain exiting configuration property.
Different modules may have their own menu items. To realize it, the module should be able to add configuration proper... jianwu jianwu

12/03/2009

03:24 PM Bug #4596 (Resolved): selecting text entry box of report item moves activation highlight but does not update properties window
Create 2 text items with different attributes. Click in the text entry area of the non-highlighted one. It will now... Oliver Soong
02:47 PM Bug #4595 (Resolved): ViewPane selection does not work with toolbar tear-off
When the toolbar is detached from the KeplerFrame the view selection drop down does not trigger view changes in the w... ben leinfelder
10:38 AM Bug #4582: reporting/module-info/module.properties
This was just an old file, that had no current use as far as we can tell. It has now been deleted. debi staggs
06:03 PM Bug #4514: Files are being saved in the Kepler installation directory
configuration/ has been moved.
I think we just need to deal with / come to a consensus on InstanceAuthNamespace and ...
Derik Barseghian
05:37 PM Bug #4578: tracking bug for changes to .kepler
.kepler now has cache and persistent areas like:
.kepler/cache/gamma.msi.ucsb.edu.OpenAuth.1278/modules/actors (etc)...
Derik Barseghian
04:39 PM Bug #4579: Remove all references to specific module names from the code.
Modules can now be referenced by a stem name which is the base name before a version, for instance "common" refers to... Chad Berkley

12/02/2009

01:11 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas
My current thinking is to just assign appropriate icons to objects so people know what they are. Then a WorkflowRun ... Aaron Aaron
01:09 PM Bug #4380: Removing LocalRepository does not remove actors from Ontologies
Removing local repositories still causes problems, the components are not being removed from the library Aaron Aaron
01:03 PM Bug #4449: exception when dragging workflow
I'm not seeing this... closing for now Aaron Aaron
01:00 PM Bug #4150: Save in Library broken
Works now Aaron Aaron
12:23 PM Bug #4409: View Documentation for an actor works once
Should be OK now. Aaron Aaron
11:45 AM Bug #4512: missing entries with multiple copies of the same KAR file in a single repository
I should clarify the first statement in my previous comment.
Two different KARs (i.e. each KAR has a different KAR L...
Aaron Aaron
11:41 AM Bug #4512: missing entries with multiple copies of the same KAR file in a single repository
With the new Library changes, having two different KARS with the same LSIDs works fine now.
As for having multiple i...
Aaron Aaron
10:51 AM Bug #4582: reporting/module-info/module.properties
I think this is here from waaay back when we did the 'ant make-module' target. I don't know why it is here, either.
C...
ben leinfelder
10:04 AM Bug #4336: Merge the old configuration systems
All .properties files have now been removed from kepler and their contents merged into the configuration manager. St... Chad Berkley
09:25 PM Bug #4592: ROML lost when saving KAR a second time
Because the model was being closed and reopened, we trashed the layout on the close (which happened after the "new" f... ben leinfelder

12/01/2009

03:08 PM Bug #4592: ROML lost when saving KAR a second time
The workaround I suggested sometimes seems to trigger bug 4571, so it might be safest to restart Kepler after saving ... Oliver Soong
02:42 PM Bug #4592: ROML lost when saving KAR a second time
The error occurs on the second File->Save Archive as long as the KAR is not closed and re-opened between.
New workfl...
Oliver Soong
02:16 PM Bug #4592: ROML lost when saving KAR a second time
*** Bug 4593 has been marked as a duplicate of this bug. *** Oliver Soong
02:14 PM Bug #4592: ROML lost when saving KAR a second time
Overwriting turns out not to be necessary. Simply File->Save Archive again. Oliver Soong
01:56 PM Bug #4592 (Resolved): ROML lost when saving KAR a second time
Create a workflow and report. File->Save Archive. The KAR should contain the ROML. File->Save Archive again, overw... Oliver Soong
02:16 PM Bug #4593: ROML lost when saving workflow with a composite actor to KAR after saving XML after saving to KAR
I think the trigger here is the second Save Archive, and this now seems to be a duplicate of the (newly modified) bug... Oliver Soong
02:08 PM Bug #4593 (Resolved): ROML lost when saving workflow with a composite actor to KAR after saving XML after saving to KAR
I haven't isolated exactly what the trigger is, but I think this is the bug I've been trying to track down for a coup... Oliver Soong
11:05 AM Bug #4591 (New): ImageJ creating folders based on file paths from prior executions saved in the MOML
Not a hugely important bug and unlikely to cause any actual problems, but a bug nonetheless.
If I generate a workf...
Oliver Soong
10:42 AM Bug #4590 (Resolved): Workflow Run Manager - Export Archive can give error
Export Archive from WRM has problems again, I think with the recent changes to Cache. Yesterday fixed an out of range... Derik Barseghian
10:36 AM Bug #4569: viewing report before executing sometimes generates persistent blank report
The last comment wasn't terribly specific.
1. Create a workflow, File->Save (say test.xml), and run it. I believe t...
Oliver Soong
06:03 PM Bug #4580: Error saving/opening KAR that has a workflow with a PortParameter
in case it's related, for reference: ptolemy bug#311 (https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=311) Derik Barseghian
05:49 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
No reports of degraded performance, going to close this. Derik Barseghian
05:37 PM Bug #4586: problem tagging all rows when selected with keyboard
Fixed in r21927. Derik Barseghian
04:38 PM Bug #4589 (New): Workflow Run Manager - tagging causes row(s) to unhighlight
When you tag a row (or rows) the row loses its highlighting, but the tagging context stays set to 'run'. You can cont... Derik Barseghian
04:19 PM Bug #4454: Workflow Run Manager - ability to display new run tags
This was fixed in r21075. Derik Barseghian

11/30/2009

03:34 PM Bug #4568: must have some way to view full path to port in report
This got moved around with some previous changes, it is now back. debi staggs
12:02 PM Bug #4336: Merge the old configuration systems
I have converted all but 4 of the .properties files to the new system. The remaining 4, uiDisplayText, uiSettings, u... Chad Berkley
10:37 AM Bug #4587 (Resolved): Assure a clean cache when module configuration changes
Because KAR files are dependent on certain modules being present in the running Kepler configuration we need to rebui... Aaron Aaron

11/26/2009

05:46 PM Bug #4586 (Resolved): problem tagging all rows when selected with keyboard
If in WRM you select all rows with, e.g., apple-A, and then tag, you won't tag all the rows. Tagging context changes ... Derik Barseghian

11/25/2009

01:03 PM Bug #4584 (New): CacheManager.getObject(KeplerLSID lsid) returns an object with the wrong LSID
It seems that objects returned by the CacheManager.getObject(KeplerLSID lsid) method do not always have the right LSI... Aaron Aaron
01:15 AM Bug #4582 (Resolved): reporting/module-info/module.properties
I am not sure what the function of this file is. However, I noticed that it references specific modules. Here is the ... David Welker
09:32 PM Bug #4581: Handle multiple revisions of components in the Component Library
As a first solution to this problem I have added a context menu item to components in the Ontologies of the Component... Aaron Aaron
09:23 PM Bug #4581 (Resolved): Handle multiple revisions of components in the Component Library
It is possible for many different revisions of an object to contain the same semantic types. The question is how to ... Aaron Aaron
06:53 PM Bug #4580: Error saving/opening KAR that has a workflow with a PortParameter
If you remove the fix to bug#3593 (re-enable commented out section in addAttribute in ActorMetadata), you don't get t... Derik Barseghian
06:22 PM Bug #4580: Error saving/opening KAR that has a workflow with a PortParameter
This is an issue with Save Archive in vanilla too.
Drag a portparam onto canvas and Save Archive and you'll get an NDE.
Derik Barseghian
05:02 PM Bug #4580 (Resolved): Error saving/opening KAR that has a workflow with a PortParameter
Opening a past run where the workflow contained a PortParameter is giving a ptolemy.kernel.util.NameDuplicationException Derik Barseghian
04:19 PM Bug #4455: provenance schema must meet tag storage and search needs
Tag table is sufficient for this release, we decided to just do simple keyword searching in the WRM. Derik Barseghian
04:12 PM Bug #4574: Able to delete workflow tags when on a run
Should be fixed as of 21866. Sean Riddle

11/24/2009

02:50 PM Bug #4579 (Resolved): Remove all references to specific module names from the code.
In certain areas of the code, there are references to specific module names. This is extremely problematic in two sce... David Welker
01:24 PM Bug #4578 (Resolved): tracking bug for changes to .kepler
Thanks everyone for your input to the "proposed changes to .kepler" email. The threads are here:
http://mercury.ncea...
Derik Barseghian
01:04 PM Bug #4577 (New): integrate, and separate from save/export, the code for Uploading
1) There's UploadToRepository (module: repository), UploadKARToRepositoryNoGUI (provenance), and ComponentUpload (gui... Derik Barseghian
12:01 PM Bug #3656: create a Provenance Client
Provenance recorder and queryable provide non-gui methods store and retrieve provenance information. Additional speci... Daniel Crawl
10:23 AM Bug #4444: Reevaluate Cache and Library startup procedure. Restore performance enhancements.
I am now getting sub 30 second startup times with a cleaned cache and sub 10 second startup times with a built cache ... Aaron Aaron
09:58 AM Bug #4320: Component Library Folders and Popup Menus
Subclasses of the LibraryPopup class can now be used to add right click menu functionality to items in the component ... Aaron Aaron
09:40 AM Bug #4319: LibraryManager
Building the library has been enhanced and now consists of 4 classes.
LibraryManager, LibraryGenerator, LibIndex, and...
Aaron Aaron
03:40 AM Bug #1898: Redesign the web service harvester and create design documentation
closed & fixed Leo Charles
03:40 AM Bug #1898: Redesign the web service harvester and create design documentation
closed Leo Charles
03:39 AM Bug #1898: Redesign the web service harvester and create design documentation
fixed Leo Charles
05:56 PM Bug #4574: Able to delete workflow tags when on a run
That's an artifact of the way I update the tag display now. I'm looking into it. Sean Riddle
05:28 PM Bug #4574: Able to delete workflow tags when on a run
If I relaunch Kepler, past run workflow tags are static (no X to click for delete). Which is good.
However, once I'v...
Derik Barseghian
04:11 PM Bug #4574 (Resolved): Able to delete workflow tags when on a run
I'm able to delete a workflow tag when I shouldn't be to, that is after that workflow has been run. This used to work... Derik Barseghian
04:50 PM Bug #3649: determine if Provenance has everything needed by Reporting
The provenance recorder is currently capturing all the data needed by reporting. Additional requirements can go in ne... Daniel Crawl

11/23/2009

03:58 PM Bug #4443: gui-free class for provenance store settings
The provenance recorder constructors use the connection parameters in the configuration file, and none of the constru... Daniel Crawl
03:38 PM Bug #4037: WRM - connect to Kepler-wide configurable provenance store
This is implemented: the config file specifies the default connection parameters for the provenance store. Daniel Crawl
10:15 AM Bug #4567: NPE viewing LSID of non-workflow entries in local repositories
Skipping the full LSIDViewer UI when we are looking at a non-NamedObj ben leinfelder
10:08 AM Bug #4572: ROML lost when reported ports are in composite actors
I was deleting the layout when the frame was closed (and the frame for the composite shared that same model). Now che... ben leinfelder
09:01 AM Bug #4571: report "lost" from KAR
I actually get the report showing in the first KAR whenever I open it.
I notice that the second KAR does not show the...
ben leinfelder
08:44 AM Bug #4569: viewing report before executing sometimes generates persistent blank report
I'm still not able to recreate this bug. ben leinfelder
07:49 PM Bug #4562: report seems to exist in MOML workflows when kar of same name exists in a local repository
Very good point. The intent was to support 1:n layouts - but that requirement got has been pushed to a later phase.
...
ben leinfelder

11/22/2009

12:57 PM Bug #4572 (Resolved): ROML lost when reported ports are in composite actors
Starting from a clean-cache:
1. Create a KAR containing a composite actor and a report:
a. SDF (iterations = 1...
Oliver Soong
12:09 PM Bug #4571 (Resolved): report "lost" from KAR
In the process of tracking down another bug, I came across some odd behavior. I'm not sure what the exact trigger is... Oliver Soong
11:41 AM Bug #4569: viewing report before executing sometimes generates persistent blank report
It's the File->Save Archive (KAR) that triggers this. After the save, when the archive has been reloaded, changing t... Oliver Soong
11:37 AM Bug #4562: report seems to exist in MOML workflows when kar of same name exists in a local repository
So what happens if I want to have 2 reports for the same workflow? If I want to generate a new report for a workflow... Oliver Soong

11/21/2009

09:17 AM Bug #4409: View Documentation for an actor works once
Still happening for me in WRP suite...retargeting to 2.0 - it seems like a bad idea to release with a bug happening f... ben leinfelder
09:12 AM Bug #4562: report seems to exist in MOML workflows when kar of same name exists in a local repository
While I can see this as odd-looking, I think it ultimately makes sense. KARs in this context are just packaging and c... ben leinfelder
09:03 AM Bug #4569: viewing report before executing sometimes generates persistent blank report
1) opened the tpc01 kar with a clean-cache
2) look at the Report Design view
3) not all items are viewable (scrolling...
ben leinfelder
05:14 PM Bug #4569 (Resolved): viewing report before executing sometimes generates persistent blank report
I unfortunately can't figure out how to replicate this yet. It occurred with the latest tpc01 report archive, althou... Oliver Soong
05:23 PM Bug #4570 (Resolved): dangling file handle for KARs
I'm not a 100% certain this is the cause, but on Windows, if I open a KAR file then close it, Kepler doesn't seem to ... Oliver Soong
04:44 PM Bug #4568 (Resolved): must have some way to view full path to port in report
Bug 4471 got rid of the report TOC. Somewhere along the line, tooltips for the report items disappeared. I now have... Oliver Soong

11/20/2009

02:56 PM Bug #4566: Workflow Run Manager - highlighting sometimes doesn't work for multiple rows
Fixed in r21805. This was a sorting issue. Also added double-click to open, and improved the way right clicks work. Derik Barseghian
01:01 PM Bug #4566 (Resolved): Workflow Run Manager - highlighting sometimes doesn't work for multiple rows
Sometimes when you select multiple rows in the WRM and then right click to get the context menu popup, WRM changes to... Derik Barseghian
02:37 PM Bug #4554: Make layout panel scroll to where the user dropped the last report item.
The designer panel now scrolls down (or up) to where you dropped the last item if there are more than a few items in ... debi staggs
01:17 PM Bug #4567 (Resolved): NPE viewing LSID of non-workflow entries in local repositories
If I have a local repository with KAR files in it and I attempt to "View LSID" on any entry that is not a MOML, I get... Oliver Soong
01:15 PM Bug #4559: local repositories not showing up in components tree
I think this bug is partly due to bug 4512, partly due to the new hiding empty repositories "feature", partly due to ... Oliver Soong
12:31 PM Bug #4559: local repositories not showing up in components tree
I'll see if I can make this happen with a simpler case. There have been unusual errors with this workflow in the pas... Oliver Soong
12:24 PM Bug #4559: local repositories not showing up in components tree
Oliver can you send me the kar you're having the problem with, I am having trouble reproducing this... Aaron Aaron
12:04 PM Bug #4507: report designer losing content when there are too many items
It would be nice to make this more flexible, but it isn't absolutely necessary at this time. However, it would be goo... debi staggs
11:40 AM Bug #4507: report designer losing content when there are too many items
I'm not currently planning on exceeding 95 items, so there's less urgency for a more involved fix. On the other hand... Oliver Soong
11:36 AM Bug #4507: report designer losing content when there are too many items
Does everyone think that this is acceptable at 95 items, or so, or should I consider creating a 'buffer' that would c... debi staggs
08:12 PM Bug #4507: report designer losing content when there are too many items
I see the problem as described at r21780, but at r21788, the number of actors is pushed up to around 95 or so. The p... Oliver Soong
06:45 PM Bug #4507: report designer losing content when there are too many items
I'm at r21647 for report\src\org\kepler\reporting\gui\ReportDesignerPanel.java. I saw you just committed 2 updates, ... Oliver Soong
06:27 PM Bug #4507: report designer losing content when there are too many items
I have a feeling that you might not have the latest revision of the ReportDesignerPanel class, can you try updating o... debi staggs
05:41 PM Bug #4507: report designer losing content when there are too many items
Beyond 5 items, I can no longer add to the bottom of the report designer. There doesn't seem to be any space, and an... Oliver Soong
05:13 PM Bug #4507: report designer losing content when there are too many items
I've been able to get this to happen on my mac (10.5.8) -- at least the part
about having more items on the report de...
Derik Barseghian
05:06 PM Bug #4507: report designer losing content when there are too many items
Will test it out on a different machine to see what happens. debi staggs
04:36 PM Bug #4507: report designer losing content when there are too many items
I just tried r21780 on OS X here in the vis lab and lost ROML content at 10 items. Something isn't matching here... Oliver Soong
08:08 PM Bug #4564: Model Reference throws error with workflows in the same folder, but still functions
What boggles my mind is the tpc09-plant-dynamics-woody.xml workflow uses a VisualModelReference actor that generally ... Oliver Soong
07:34 PM Bug #4564: Model Reference throws error with workflows in the same folder, but still functions
I take back that bit about ../tmp/referred.xml working. I think I just got confused. An error seems to be thrown fo... Oliver Soong
07:11 PM Bug #4564 (New): Model Reference throws error with workflows in the same folder, but still functions
If I have a referring model (referring.xml) and a referred model (referred.xml) in the same folder, I have difficulty... Oliver Soong
07:55 PM Bug #4565: clean wrp checkout has no actors
Missed a clean-cache step from the previous checkout. Oliver Soong
07:15 PM Bug #4565 (Resolved): clean wrp checkout has no actors
I just did a clean checkout, and the Components, Projects, and Statistics branches are completely missing. The Actor... Oliver Soong
05:45 PM Bug #4563: components search seems to be broken
If you follow the instructions in comment 5 for bug 4559, you'll get a Kepler instance with the report archive and ru... Oliver Soong
05:37 PM Bug #4563: components search seems to be broken
Hm, something got buggered somewhere along the way, but I'm not sure exactly what. A clean-cache fixed it, but now I... Oliver Soong
05:30 PM Bug #4563: components search seems to be broken
It's working for me at r21785. There's still the issue with non-workflow items within kars not showing up, but I'm se... Derik Barseghian
05:19 PM Bug #4563 (Resolved): components search seems to be broken
It no longer seems to return anything. Oliver Soong

11/19/2009

03:59 PM Bug #4559: local repositories not showing up in components tree
This is slightly more complicated. I restarted Kepler again, and now both KARs show up in the components tree.
So s...
Oliver Soong
03:47 PM Bug #4559: local repositories not showing up in components tree
I deleted the run archive from the repository and restarted Kepler, but the report archive (MOML and ROML only) still... Oliver Soong
03:44 PM Bug #4559: local repositories not showing up in components tree
yeah, definitely still a little buggy, "ant clean-cache" will fix things if they get out of sync... I'll keep workin... Aaron Aaron
03:40 PM Bug #4559: local repositories not showing up in components tree
Well, I'm now seeing the described behavior at r21780, but I'm missing a KAR. I've got one that's just the MOML and ... Oliver Soong
03:23 PM Bug #4559: local repositories not showing up in components tree
Yeah this is an interesting artifact of the new way the Component Library is built. I'm not sure if this is a bug or... Aaron Aaron
02:25 PM Bug #4559 (Resolved): local repositories not showing up in components tree
Summary says it all. I'm at r21772, and the default workflows repository isn't in the components tree. Adding repos... Oliver Soong
03:32 PM Bug #4507: report designer losing content when there are too many items
I just tested it with 26 items on OSX, and it seems to be working correctly. debi staggs
03:28 PM Bug #4507: report designer losing content when there are too many items
I just tested it with 26 items in the report designer and there were no problems on OSX. debi staggs
03:28 PM Bug #4507: report designer losing content when there are too many items
I just put 26 items in the report designer and there were no issues on OSX. debi staggs
02:52 PM Bug #4507: report designer losing content when there are too many items
This doesn't quite seem to be fully fixed. I'm no longer losing report items from the test case, but add 15 items to... Oliver Soong
03:09 PM Bug #4562: report seems to exist in MOML workflows when kar of same name exists in a local repository
Yeah - so right now the KARs in the local repository are being cached - including the report.
The report is associate...
ben leinfelder
02:49 PM Bug #4562 (Resolved): report seems to exist in MOML workflows when kar of same name exists in a local repository
Create a workflow, save it with some basename (e.g., test.xml), then create a report and save it with the same basena... Oliver Soong
02:35 PM Bug #4561 (New): icon overlays not showing up for actors in the components tree
RExpression used to have the little R icon show up in the components tree (it was an easy way to find the RExpression... Oliver Soong
02:27 PM Bug #4560 (Resolved): can't remove local repositories
This may be related to bug 4559, but attempting to remove local repositories from the components sources list gives a... Oliver Soong
11:47 AM Bug #4555: error exporting etc >1 run with same name but different wf
Ok, fixed in r21769 by adding a little check in KARBuilder right before createKAR that removes karEntry "duplicates",... Derik Barseghian
08:15 AM Bug #4555: error exporting etc >1 run with same name but different wf
put a change in yesterday that will prevent a "blank" ROML from being serialized. But I can definitey imagine a case... ben leinfelder
 

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