Activity
From 04/02/2009 to 05/01/2009
05/01/2009
- 06:01 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
- Checked in a fix.
We were intentionally skipping adding PortParameters when exporting to an actor kar. Does anyone ... - 03:21 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
- I note that when I set a portparameter in an actor within a composite, and then export the composite, the value is sa...
- 04:03 PM Bug #4050 (Resolved): dragging actors can leave artifacts until you stop dragging
- Dragging some actors leaves visual artifacts until you stop dragging. The color of the artifacts seems to match the a...
- 03:37 PM Bug #4049 (New): Import actor that already exists appends strange numbering scheme
- When I import an actor that already exists, saying Yes to use the next available id, the new actor appends a numberin...
- 03:30 PM Bug #3242: dlls should not go in c:/Windows/System32
- Fixed this by allowing the bootstrapper to modify the PATH env variable at runtime. While the java.library.path vari...
- 02:09 PM Bug #3242: dlls should not go in c:/Windows/System32
- After re-reading the jguru thread that christopher posted, I added common/lib to the PATH in windows and now there is...
- 02:00 PM Bug #3242: dlls should not go in c:/Windows/System32
- On windows XP, if the dlls are not in the System32 directory, I get the following error:
ptolemy.kernel.util.Illegal... - 02:51 PM Bug #2321: merge exp files into ptolemy CVS
Hi Chad, I am currently under the impression that it would be a substantial effort to open multiple actor canvases i...- 02:34 PM Bug #2321: merge exp files into ptolemy CVS
- Enabling multiple tabs to be opened in one window is a feature we already identified and mocked up as part of the rep...
- 01:08 PM Bug #2321: merge exp files into ptolemy CVS
- Just noticed something weird about this. If you draw a rubber-band box around the actors, the selection is shown, bu...
- 02:34 PM Bug #4048 (New): Get error message when too much code in single R actor
- I have an R actor that has quite a few lines of code. It seems that when I have more than 3,224 (I think) characters ...
- 01:42 PM Bug #4047 (Resolved): Remove Component doesn't work
- Right click an actor in library, Remove Component doesn't remove it from the tree.
- 01:05 PM Bug #4046 (New): ComadTest should report more details when detecting an error
- The ComadTest actor is used to create automated tests of COMAD features. Because it is often useful to include sever...
04/30/2009
- 06:17 PM Bug #3691: JButton labels truncated on macOSX
- Good point, I haven't seen any others so far. If anyone sees any other button label truncation please report here.
- 05:53 PM Bug #3691: JButton labels truncated on macOSX
- Looks great to me, Derik.
By the way, is this the only place where button labels were truncated, or are there othe... - 05:51 PM Bug #3691: JButton labels truncated on macOSX
- I'll leave this open for now until others have had a chance to see the new ui and possibly object.
- 05:48 PM Bug #3691: JButton labels truncated on macOSX
- I've checked in a fix; I made the buttons 11px bigger. I've removed some other spacing trying to minimize the widenin...
- 05:05 PM Bug #2569: Popup (context) menu do not appear for relations and connections
- Fixed by editing
common/configs/ptolemy/configs/kepler/uiContextMenuMappings_en_US.properties
The way to fix these i... - 04:54 PM Bug #3932: Configure Actor actor context menu item missing
- Fixed by editing
common/configs/ptolemy/configs/kepler/uiContextMenuMappings_en_US.properties
Added comment about deb... - 10:28 AM Bug #4041 (New): synchronization in matlab actor
- The matlab actor starts a new matlab process in preinitialize and closes it in wrapup. Each instance of the actor in ...
- 10:05 AM Bug #2321: merge exp files into ptolemy CVS
- I've made changes and removed util/src/ptolemy.
One remaining issue is ActorGraphFrame, see the discussion below.
I'v... - 10:04 AM Bug #4040 (New): make a new module called globus to host globus actors and needed packages.
- we have duplicate globus libs in current build system: common\etc\cog\, util\lib\jar\globus\lib, util\lib\jar\globus\...
- 09:58 AM Bug #2363: Move Actions out of BasicGraphController
- I'm closing this, I created
util/src/org/kepler/gui/SemanticSearchDialogAction.java
util/src/org/kepler/gui/WorkflowT... - 09:54 AM Bug #4039 (New): matlab actor always stops matlab process in wrapup
- The matlab actor always stops the matlab process when model execution ends. It would be nice if the actor could (opti...
- 09:33 AM Bug #4038: The first time ant change-to is run, it prints a stack trace
- I'm also seeing this behavior. It looks like it's trying to read the modules.txt file before it gets checked out.
- 09:09 AM Bug #4038 (Resolved): The first time ant change-to is run, it prints a stack trace
- The first time I run ant change-to under Windows, I get:
change-to:
[change-to] java.io.FileNotFoundException: c:... - 09:15 AM Bug #3988: Rectangle shifts position on resize
- I'm closing this, my solution was to modify the configuration
so that new RectangleAttributes are created with center...
04/29/2009
- 06:24 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- re-assigning to David - maybe he can shed some light on what might be happening.
(Unfortunately it seems like it migh... - 06:08 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- This same error occurs when we use the "run-workflow" ant target:
$> ant run-workflow -Dworkflow=../common/demos/gett... - 06:00 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- removing the call to the EcogridService does not fix the invalid memory error. This doesn't have to do with that serv...
- 04:04 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- reverting to an older org.ecoinformatics.ecogrid.RegistryService-stub.jar version did not work (still had the same er...
- 02:52 PM Bug #4034 (Resolved): "Invalid memory access" when running workflow from the command line
- When running even very simple workflows from the command line, Kepler fails with the following output. For some reas...
- 05:16 PM Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
- Yep, I no longer see this bug on either Mac or Linux, closing.
- 05:09 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- You can rearrange columns now and they'll stay in sync with the search header.
Column specific default text now works... - 03:18 PM Bug #4037 (Resolved): WRM - connect to Kepler-wide configurable provenance store
- This is Phase 2 for the WRM interface:
-Add a Kepler-wide provenance configuration. The intent is that the WRM inter... - 03:11 PM Bug #4036 (Resolved): WRM - connect to configurable provenance store
- Currently the WRM viewer connects to the default provenance store specified in a .properties bundle in the WRM module...
- 03:06 PM Bug #4035: MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors.
- See bug 3097 for the provenance of this bug.
- 03:05 PM Bug #4035 (New): MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors.
- When you run a -nogui kepler run, MoMLSimpleApplication should have the ability to filter some of the gui elements in...
- 03:03 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- Update:
>2. (from comment #6) pause before exiting when running with '-gui'.
I'm looking into this now. I'm not ex... - 02:58 PM Bug #3634: Define the interface between Provenance and Reporting
- we have this look up implemented now - closing
- 02:56 PM Bug #3949: Get the installer working with the new build system
- Since R is now in its own module, the installer not only has to have the option to install R, but also to install the...
- 02:53 PM Bug #3990: Include "workflow-run-manager" module in "wrp" suite
- closing this - now running with the real WRM in the "wrp" module
- 01:58 PM Bug #3990: Include "workflow-run-manager" module in "wrp" suite
- I've removed the [placeholder] WRM screen from reporting's config and module.
I've added the WRM module to the wrp su... - 02:27 AM Bug #4033: Can't compile, MakeKars not found
- Fixed.
04/28/2009
- 08:48 PM Bug #2321: merge exp files into ptolemy CVS
- Open Actor and Convert to Class are in the actor context menu for me
in a clean checkout, after
mkdir kepler
cd kepl... - 07:22 PM Bug #4033 (Resolved): Can't compile, MakeKars not found
- I can't get the head to build, and the compiler is complaining it can't find MakeKars. Revision 17442 will compile, ...
- 12:51 PM Bug #3998: Report Viewer - render Report Instance on???Event
- I've got the "event-state" module in Kepler now. It's based on the Morpho event management classes.
The "test" button... - 12:01 PM Bug #3986: RExpression confounding R working directory and .kepler folder
- we might consider removing this parameter since it's not really useful and will loose any utility it provides once we...
- 11:56 AM Bug #3986: RExpression confounding R working directory and .kepler folder
- I was under the impression the R working directory (Rwd) was a parameter to set the working directory of the R actor,...
- 11:58 AM Bug #4026: Bootstrapper will not run kepler in a directory with spaces
- This was actually a problem with the lib path, not the classpath. The classpath is handled internally by the Java an...
04/27/2009
- 07:03 PM Bug #4025: XSLTActor accepts StringToken as input
- The input port can now read either xml or string tokens.
- 07:02 PM Bug #3970: XSLT unnecessarily writes to a file
- XSLTActor no longer writes the output to a temporary file.
- 07:01 PM Bug #3968: XSLTActor temporary file bug
- XSLTActor no longer writes the input XML to a temporary file.
- 04:04 PM Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
- Derik - are you still seeing this bug?
I do not encounter the parsing error ("4L" etc...)
I believe we changed some t... - 03:42 PM Bug #3986: RExpression confounding R working directory and .kepler folder
- i see that it fails until you game the type lattice, but afterward I believe this functions as designed.
The "R worki... - 02:20 PM Bug #2321: merge exp files into ptolemy CVS
- After the merge of ActorController, Open Actor and Convert to Class are no longer in the context menu for actors.
- 08:51 AM Bug #2321: merge exp files into ptolemy CVS
- ptolemy/vergil/actor/ActorController.java has been updated.
A ListenToActor action was added to the version in the pt... - 12:29 PM Bug #4029 (Resolved): missing dependency for tools.jar in windows
- The documentation fails to mention the need for a dependency on tools.jar in setting up building Kepler with Eclipse ...
- 12:01 PM Bug #3739: Issues in inferring data lineage via the provenance recorder
- 1, 2: version 8 of the schema explicitly includes token dependencies, and can be queried using the Queryable interfac...
- 10:34 AM Bug #3649: determine if Provenance has everything needed by Reporting
- Derik and I were talking about how the schema could accommodate more than just the MOML file. Currently there is a co...
- 10:19 AM Bug #2315: Unable to run multiple Kepler instances simultaneously
- set the error writer for the DB server to null unless debug log level is enabled.
this prevents the stacktrace from s... - 10:17 AM Bug #3917: refactor schema creation code out of recording classes
- Schema creation code has been separated.
04/25/2009
- 05:45 PM Bug #4028: Nondeterministic Merge Actor doesn't generate output
- The change after 52467 is:
2009-02-25 16:20 rodiers
> * [r52468]
> /trunk/ptolemy/domains/pn/kernel/Nondetermini... - 04:03 PM Bug #4028 (Resolved): Nondeterministic Merge Actor doesn't generate output
- My workflow that used to work but does not work now. Finally I found out it is because I can not get output the Nonde...
- 04:27 PM Bug #3988: Rectangle shifts position on resize
- I might have this one fixed, Edward may have some comments.
It turns out that RectangleAttribute and ResizablePolygo... - 02:13 PM Bug #2315: Unable to run multiple Kepler instances simultaneously
- When I run two instances of Kepler using "ant run", I see the message:
[run] Building Kars...
[run] [Serve... - 01:19 PM Bug #3128: Kepler devel tree can't be compiled in java 1.6.0: DBConnection problem
- DBConnection has been removed since it provided trivial functionality.
Kepler now compiles with java 1.6.
- 12:25 PM Bug #3363: Show name checkbox does nothing for most Parameters
- Fixed!
The solution here was to edit ptolemy/actor/gui/RenameConfigurer.java
and not add the "Show name" checkbox if ... - 10:07 AM Bug #3984: RequireVersion parameter cannot be deleted from a saved workflow
- Fixed!
The problem was that it was not possible to delete a RequireVersion Attribute
from a saved model. One could a...
04/24/2009
- 05:05 PM Bug #3939: Kepler Unique LSID Namespace generation
- To test out getting a unique namespace from the test Authority Namespace service, delete the InstanceAuthNamespace fi...
- 05:04 PM Bug #3939: Kepler Unique LSID Namespace generation
The following requirements have been implemented:
-----------------------
A Kepler instance always has a unique auth...- 04:46 PM Bug #3967: Unable to run java -jar kepler-trunk.jar with -nogui -nocache -runwf fullworkflowpath options
- There are now two ways to do this. On the installed version of kepler, you can use the kepler.sh or kepler.bat files...
- 04:44 PM Bug #3483: case sensitive Leopard install fails
- The installer is now performing a case-sensitive install and I have made sure to use correct case on all files being ...
- 04:42 PM Bug #3369: Kepler will not start (OS X 10.52) as JavaApplicationStub is not executable
- Fixed with the new installer code. The installer now makes sure that JavaApplicationStub is executable when it insta...
- 04:40 PM Bug #3949: Get the installer working with the new build system
- David created a bootstrapper that launches kepler and builds the classpath dynamically. The installer now makes full...
- 04:39 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- Created a new task 'ant startupScript' which generates 4 scripts to start kepler. kepler.sh, kepler.bat, kepler.exe ...
- 02:27 PM Bug #3586: COMAD traces should be reproducible when there is limited concurrency
- This feature is now complete. Traces rendered by CollectionDisplay, TraceWriter, and ComadTest now can produce repea...
- 12:32 PM Bug #4014: Remove "include class" checkbox in export kar dialog
- commented out the dialog.
- 12:28 PM Bug #4014: Remove "include class" checkbox in export kar dialog
- This is not a checkbox - it is a JOptionPane dialog with the prompt:
"Would you like to save the actor's class file w... - 11:29 AM Bug #4026 (Resolved): Bootstrapper will not run kepler in a directory with spaces
- When the bootstrapper is run, it generates the classpath based on where the kepler directory is. If this location in...
- 06:45 AM Bug #4025 (Resolved): XSLTActor accepts StringToken as input
- The input to the XSLTActor (org.sdm.spa.XSLTActor) is XML, which should be passed in as an XMLToken. However, the XSL...
04/23/2009
- 04:53 PM Bug #3934: Report Designer - editable Report Title field
- The text I enter in the Text Field does not seem to be present in the ReportLayout object that I get from the Workflo...
- 04:03 PM Bug #4022 (Resolved): undesired file:\ prefix added by FileParameter
- User reports "file:\" being prefixed to paths when using FileParameter to refer to files in same directory as workflo...
- 03:54 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- Duration search has been mostly implemented and is now usable. Like date, it still needs single-duration operator-les...
- 03:48 PM Bug #3925: ant run does not always work from paths with spaces
- I notice similar problem while running java -jar kepler-trunk.jar on Windows machine. When installation folder is on ...
- 10:39 AM Bug #3986: RExpression confounding R working directory and .kepler folder
- retarget and reassign to myself
(hunch is that working directory hasn't been "working" in a while since it subverts t... - 09:35 AM Bug #4021 (Resolved): KAREntry Handler
- This is a somewhat amorphous topic for me (ben) - but I wanted to make a place holder for it. Hopefully we can flesh ...
- 08:45 AM Bug #4020 (Resolved): WRP - create WorkflowRun object to encapsulate provenance/report instances
- We've got a "Workflow" object that allows us to keep track of Workflow models (MOML) and Report Layouts (ROML). We ne...
04/22/2009
- 05:37 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- Workflow, Date and User columns have been tied to search and work pretty well now, though single-date-operator-less s...
- 03:56 PM Bug #4019 (Resolved): Workflow View in left pane
- A view tab in the left pane that displays workflows would be very useful. It would either allow a user to drag a wor...
- 03:54 PM Bug #4018 (Resolved): Remove non-2.0 functionality from 2.0 release
- Make sure any functionality not on the 2.0 release list is removed prior to creating the final installers.
- 03:53 PM Bug #4017 (Resolved): Make sure module manager and installer work together wrt the classpath
- Need to make sure the module manager and the installer are on the same page when it comes to building and using the c...
- 03:48 PM Bug #3900: leaving fullscreen mode gives an NPE and closes window
- same as 2369
*** This bug has been marked as a duplicate of bug 2369 *** - 03:48 PM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
- *** Bug 3900 has been marked as a duplicate of this bug. ***
- 03:36 PM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
- Try to figure this out and remove full screen mode if we can't get it fixed before 2.0
- 03:46 PM Bug #3932: Configure Actor actor context menu item missing
- *** Bug 3896 has been marked as a duplicate of this bug. ***
- 03:46 PM Bug #3896: String Parameter does not offer option to configure unlike 1.0 release.
- Same bug as 3932
*** This bug has been marked as a duplicate of bug 3932 *** - 03:44 PM Bug #3809: jni actors do not work
- Check that this works with the installer.
- 03:41 PM Bug #4016 (Resolved): Test IZPack Installer on 64 bit machine
- Determine if this works.
- 03:40 PM Bug #4015 (Resolved): Add 64 bit disclaimer to installer
- Add a statement saying we don't support 64 bit machines to the installer and the download website.
- 03:39 PM Bug #3785: Unclear Java requirements for Kepler installer on Vista 64-bit
- Need to add a disclaimer to our download page that says that kepler is meant for 32 bit systems and that we have not ...
- 03:37 PM Bug #3238: Refactor NMI build
- Need to change the NMI build so that tests run under the test stage instead of the build stage. Make sure all tests ...
- 03:35 PM Bug #3977: Devlop test for ptII overrides in the system
- David developed a test in the build system for this. You can run 'ant report-overrides' to see a list.
- 03:33 PM Bug #3967: Unable to run java -jar kepler-trunk.jar with -nogui -nocache -runwf fullworkflowpath options
- check that all command line arguments are passed to the execution scripts.
- 03:32 PM Bug #4014 (Resolved): Remove "include class" checkbox in export kar dialog
- This check box should be removed because we do not currently support including class files in the kar.
- 03:30 PM Bug #3734: Some demos no longer work after new build/repos
- make sure all demos work with the new installer.
- 03:29 PM Bug #4013 (Resolved): Make sure duplicate jars are not included in the installer
- to the greatest extent possible, try to reduce the size of the installer by removing duplicate jars.
- 03:28 PM Bug #3027: jar handling issues
- Try to add shared jar files to one module instead of repeating them throughout the repository.
- 03:26 PM Bug #3898: update .kepler instead of removing it between versions
- Aaron agreed to take this on with help from david and chad. We need to be able to upgrade the .kepler directory betw...
- 03:24 PM Bug #3976: Update Documentation for 2.0 release
- I will take over as the editor of the documentation but will pass out various sections to others to author.
- 03:23 PM Bug #2321: merge exp files into ptolemy CVS
- In the conference call on 4/21/09, Christopher agreed to take a pass at this and I (chad) will finish off whatever he...
- 03:22 PM Bug #3905: In devel tree, build-area should be renamed to build
- Closing this. It was thought that the name 'build' would make people think they could delete the directory, so the n...
- 02:03 PM Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs
- retarget to 2.0
- 10:57 AM Bug #3999: WRP - create event-driven states for Kepler
- Looking at taking work done in the Morpho project that deals with tracking application events and state changes and b...
- 09:36 AM Bug #4012: update documentation to explain adding actor to library via KAR
- It would be great if the process of creating KAR files and registering them with the library could be automated for t...
- 09:29 AM Bug #4012 (New): update documentation to explain adding actor to library via KAR
- The current Hello World Tutorial stops the tutorial at using 'Instantiate Component' to place an actor on the canvas....
04/21/2009
- 06:19 PM Bug #4010: RExpression2 - tracking for backwards compatibility
- I've gone through the existing R demos (now in modules/r/demos/R) and tested them with the RExpression2 actor in plac...
- 04:59 PM Bug #4010: RExpression2 - tracking for backwards compatibility
- 1. Numbers are converted to ArrayTokens of numbers when going from JRI -> Ptolemy. This is a JRI quirk/feature in tha...
- 04:47 PM Bug #4010 (New): RExpression2 - tracking for backwards compatibility
- This bug is meant to help identify and track differences between the script-based (original) RExpression actor and th...
- 05:55 PM Bug #3586: COMAD traces should be reproducible when there is limited concurrency
- I am going to add to the base class of all actors that render COMAD collections (including ComadTest) the ability to ...
- 04:43 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
- Since workflows created under kepler-trunk don't always load smoothly under kepler-1.0, here is an equivalent workflo...
- 04:42 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
- Both 1.0.0 and trunk will throw errors, but trunk seems to have more difficulty than 1.0.0. Under trunk, one of the ...
- 04:37 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
- judithk.306.16
2001-2003 are public, 2004-2006 are private. - 02:24 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
- What datapackage (id) are you downloading?
- 02:22 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
- This workflow will throw four errors on load and the EML 2 Dataset actor will be red with an ERROR label, but it will...
- 02:21 PM Bug #4008 (Resolved): EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
- When a dataset on KNB has some tables that are public and some tables that are private, EML 2 Dataset attempts to loa...
- 04:04 PM Bug #3934: Report Designer - editable Report Title field
- Added split pane and inner report layout panel to the report designer. This allowed us to add a simple header and ti...
- 04:00 PM Bug #3809: jni actors do not work
- now that the R actors (and the JRI implementations) have been moved to another module, I'm using a colon-separated li...
- 03:06 PM Bug #3931: Get the R actor working with JNI
- We've moved RExpression actors (both the script-based and the JRI-based implementations) to a new and separate module...
- 02:48 PM Bug #4006: Move R actor to separate module
- -moved code and demos and dlls and jars to the "r" module
-added "r" module to "kepler-trunk" modules.txt (might need... - 11:30 AM Bug #4006 (Resolved): Move R actor to separate module
- We want better facilitate modularization (and allow different release schedules for this very important actor).
I'll... - 02:36 PM Bug #4009 (Resolved): kepler 2.0 must provide everything needed for modules
- This is a tracking bug meant to ensure that the standard kepler 2.0 system provides everything needed by modules.
... - 12:52 PM Bug #3782: Kepler-trunk fails to properly read in kar files the first time after they are built.
- This bug has somehow been resolved. I tested it today and could not reproduce the error any longer.
- 12:25 PM Bug #3977: Devlop test for ptII overrides in the system
- There are no overrides amongst the core modules of Kepler. (However, there are overrides of parts of Ptolemy.)
- 11:20 AM Bug #4004: error inferring widths in instance of class actor
- The problem was a result of restructuring the code to allow using width inference in model transformation and pTera. ...
- 09:22 AM Bug #4004 (Resolved): error inferring widths in instance of class actor
- I get an exception when creating an instance of a class actor that contains a relation:
1. place composite actor o... - 11:13 AM Bug #3803: Cannot open a workflow through the command prompt, open with, or send to menus
- not critical for 2.0 release. it's a nice feature to have, but not blocking the release.
- 11:13 AM Bug #3904: devel tree should have a top level build.xml file and README.txt
- The name "build" is a common directory name for a place where classes are built. The fear of using the term "build" f...
- 10:39 AM Bug #2363: Move Actions out of BasicGraphController
- I'll take this bug as part of bug # 2321.
- 10:32 AM Bug #3947: Create a module manager
- I just tried Tools -> Module Manager, and it is pretty slick!
Is there anyway to avoid downloading modules?
Ideally, ... - 09:50 AM Bug #3605: problem with ProvenanceRecorder
- I fixed this in r16612: unregister listeners when changing recording types.
- 09:12 AM Bug #4003 (New): Support for non-GUI Kepler installer.
- Many users need to install Kepler on a cluster or other distributed environments where they do not have a GUI. So it ...
04/20/2009
- 05:19 PM Bug #3948: Create new configuration system supporting modules
- Last week, I spoke with Edward about runtime configuration and he
believes that it would be fairly easy to create an... - 05:07 PM Bug #4002: RExpression2 - handle arbitrary R data structures
- Here is an example script that creates different data objects:
x <- 1:10
y <- x + rnorm(10)
f <- y ~ x
l <- lm(f)
s <... - 05:06 PM Bug #4002 (New): RExpression2 - handle arbitrary R data structures
- Not everything in R fits into the Ptolemy types (nor the JRI types, for that matter).
The lm() method, for instance,... - 04:56 PM Bug #4001 (Resolved): WRP - Save/Open KARs containing MOMLs and ROMLs
- In order to support report layouts with momls, we want to shift over to opening and saving not just the moml xml, but...
- 04:53 PM Bug #4000 (Resolved): WRP - upload PRAs to repository
- Similar to the KAR upload feature for sharing actors, Publication Ready Archives should be uploadable so that people ...
- 04:46 PM Bug #3949: Get the installer working with the new build system
- Can't you do something like:
specURL = Thread.currentThread().getContextClassLoader()
.ge... - 03:37 PM Bug #3949: Get the installer working with the new build system
- Have run into all kinds of problems trying to make a Windows EXE file with our new module setup. Launch4J assumes th...
- 04:43 PM Bug #3999 (Resolved): WRP - create event-driven states for Kepler
- This is probably more general than the "reporting" module, but I am putting it here because this has the most immedia...
- 04:37 PM Bug #3998 (Resolved): Report Viewer - render Report Instance on???Event
- We need to create an event/state feature that allows us to trigger events in different views. One such action would b...
- 03:17 PM Bug #3708: Case actor issues
- For issue 1:
Case uses CaseGraphFrame to display tabs for each refinement. CaseGraphFrame is a subclass of ActorGrap... - 02:51 PM Bug #3997: Supporting display actor conversion for command line execution.
- What's in the Hydrant is just a new MoML filter and a set of new classes which extend display related actors, like Di...
- 02:30 PM Bug #3997: Supporting display actor conversion for command line execution.
- Am I to understand that Hydrant has this code already?
Cool.
It seems a little heavyweight to require Hydrant here,... - 02:20 PM Bug #3997 (Resolved): Supporting display actor conversion for command line execution.
- When executing workflow for batch mode, users may want the display actors in the workflow can be converted automatica...
- 02:25 PM Bug #3251: Installer Splash Screen should be an HTML Widget
- I'm the reporter on this, it was assigned to Dan Higgins, I'm reassiging
it to Chad for his configuration. The issue... - 02:19 PM Bug #3242: dlls should not go in c:/Windows/System32
- I'm the reporter on this bug, I noticed it was assigned to Dan Higgins
so I'm reassigning it to Chad as he is working... - 02:15 PM Bug #2321: merge exp files into ptolemy CVS
- See bug # 3977, Devlop test for ptII overrides in the system
util/src/ptolemy/README.txt
says:
Below are files that... - 01:58 PM Bug #3996 (Resolved): Report Model - [de]serialize Items of Interest
- After selecting items of interest from a workflow model, you will loose those selections if you close Kepler. We need...
- 01:53 PM Bug #3995 (Resolved): Report Model - [de]serialize Report Item properties
- Need to make sure we are saving the properties when they are edited, and also setting them when report layouts are op...
- 01:49 PM Bug #3994 (Resolved): Report Designer - use "workflow outline" rather than Items of Interest
- Instead of requiring that users manually add ports and parameters to the list of "Items of Interest" - we could use a...
- 01:44 PM Bug #3993 (Resolved): Report Designer - add parameters to the Items of Interest
- Actor ports are currently the only "reportable item" - we need to include diretor/actor/workflow parameters as "Items...
- 01:42 PM Bug #3992 (Resolved): Report Designer - finalize Report item properties
- We've got the window for editing them - but it's still unclear exactly what properties we'll want/need to support. Ri...
- 12:18 PM Bug #3991: large workflow errors
- both.xml: The large workflow with 2 composite actors
rain.xml: One composite actor alone
buffalo.xml: The other compo... - 12:08 PM Bug #3991 (Resolved): large workflow errors
- I have a large workflow (both.xml) that seems to be generating these errors:
Unable to parse the MetaData: null
... - 12:13 PM Bug #3691: JButton labels truncated on macOSX
- I think Matt wants the buttons to follow native l+f (i.e. don't use the square buttons i posted).
- 12:01 PM Bug #3606: ProvenanceRecorder config actor menus
- I believe Daniel has fixed this, I no longer see these issues.
- 11:54 AM Bug #3990 (Resolved): Include "workflow-run-manager" module in "wrp" suite
- Rather than running as it's own suite, the WRM module should be included in the WRP suite. WRP includes provenance an...
- 11:44 AM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
- This is still a bug. I haven't looked into it yet.
- 10:54 AM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
- bug #3900 addresses the leaving full screen crash.
- 10:51 AM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
- This problem appears now to be worse (running kepler-trunk). Going to fullscreen mode and then hitting escape now ca...
04/18/2009
- 06:45 PM Bug #3984: RequireVersion parameter cannot be deleted from a saved workflow
- This bug is replicatable in a non-Kepler Ptolemy installation.
File -> New -> Graph Editor
Drag in a RequireVersion a... - 06:28 PM Bug #3988: Rectangle shifts position on resize
- This bug: "create a rectangle (components->workflow->workflow documentation) and
resize it," is also present in Ptole...
04/17/2009
- 12:11 PM Bug #3988 (Resolved): Rectangle shifts position on resize
- If I create a rectangle (components->workflow->workflow documentation) and resize it, the entire rectangle shifts sli...
04/16/2009
- 11:37 AM Bug #3949: Get the installer working with the new build system
- I have added two new tasks to the build system and two new targets. The first is the installer task which creates th...
04/14/2009
- 06:22 PM Bug #3986 (Resolved): RExpression confounding R working directory and .kepler folder
- If I have two RExpression actors, I might expect them to operate in different working directories, yet still be able ...
- 05:56 PM Bug #3985: Types resolved to unacceptable types
- This bug is slightly more fun. Change the SDF Director to allow disconnected graphs, delete the relation, then run i...
- 05:46 PM Bug #3985 (Resolved): Types resolved to unacceptable types
- URL provides a sample workflow that has been demonstrating the error on my system. Because this problem has been con...
- 11:17 AM Bug #3809: jni actors do not work
- i'd assume that the installer/launcher version of Kepler will be able to set the java.library.path property on start ...
- 11:16 AM Bug #3984 (Resolved): RequireVersion parameter cannot be deleted from a saved workflow
- In an unsaved workflow (no associated file), RequireVersion can be added and deleted as expected. If I save an entir...
- 10:00 AM Bug #3910: RExpression multiport input drops record columns
- Closing. It was a bug in Kepler 1.0.0 with RExpression1 that works in Kepler 1.x dev with RExpression1. I had it wr...
- 09:07 AM Bug #3963: RExpression2 - support mixed lists output from R
- the R expression:
list(1, TRUE, 3)
preserves the numeric/boolean typing in the list:
{{1.0}, {true}, {3.0}}
This is c...
04/13/2009
- 05:09 PM Bug #3910: RExpression multiport input drops record columns
- I tried this with the RExpression actor (AKA the original "RExpression1") off of kepler-trunk and it seems to work. E...
- 04:29 PM Bug #3960: RExpression2 - support arrayType(arrayType(....)) tokens
- out of my control!
- 04:25 PM Bug #3960: RExpression2 - support arrayType(arrayType(....)) tokens
- Why make assumptions about dropping single element list structures? Maybe I want a list of single element lists.
- 04:01 PM Bug #3960: RExpression2 - support arrayType(arrayType(....)) tokens
- can now handle arrayType(arrayType(...) so that the given expression ends up looking like:
{"1", "b", "3"}
Notice tha... - 03:13 PM Bug #3962: RExpression2 - support RecordTokens with length=1
- RExpression2 actor now accepts the length=1 RecordToken, but slightly mutates the structure during the conversion.
Pt... - 10:44 AM Bug #3962: RExpression2 - support RecordTokens with length=1
- I can see in the RExpression2 code that I'm assuming RecordTokens contain ArrayTokens. But when there's only one Toke...
- 10:53 AM Bug #3963: RExpression2 - support mixed lists output from R
- for mixed-type lists that contain strings, all items will end up as strings in Ptolemy. arrayType(scalar, ...) token...
- 10:35 AM Bug #3961: RExpression2 - support arrayType(scalar, ....) tokens
- My only guess with handling heterogenous array items is to use the low-level rniPut(...) methods in JRI and manually ...
- 10:32 AM Bug #3977: Devlop test for ptII overrides in the system
- I am confused by the rationale here for not having overrides in the release. How could it cause problems loading addi...
- 10:21 AM Bug #3977 (Resolved): Devlop test for ptII overrides in the system
- Standard releases of Kepler can contain no overrides because it may cause problems with loading additional modules in...
- 10:26 AM Bug #1750: Allow KAR files to include jar/class files
- A possible addition to this system would be to have the JVM automatically find jars in a kar file and add them to the...
- 10:14 AM Bug #3976 (Resolved): Update Documentation for 2.0 release
- Need to update the Getting Started Guide, the user guide and the actor reference with new 2.0 features.
04/10/2009
- 05:40 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- After some further thinking and discussing of the search interface, I've decided to continue to pursue the integrated...
- 04:12 PM Bug #3973 (New): Additional information for 64-bit users installing 1.0.0
- Kepler 1.0.0 on 64-bit Windows systems seems to require a 32-bit java install, which is not the default provided by j...
- 01:17 PM Bug #3970: XSLT unnecessarily writes to a file
- (In reply to comment #1)
> Some XML documents are large enough that String representations can memory
> limited. By ... - 09:17 AM Bug #3970: XSLT unnecessarily writes to a file
- Some XML documents are large enough that String representations can memory limited. By using temporary files properl...
- 08:31 AM Bug #3970 (Resolved): XSLT unnecessarily writes to a file
- Instead of creating a temporary file that may fail, write the XSLT output to a string buffer.
//XSLT.java
StringW... - 08:31 AM Bug #3968: XSLTActor temporary file bug
- Disregard comment #1 and see Bug 3970.
- 05:32 AM Bug #3968: XSLTActor temporary file bug
- The file XSLT.java has the same problem for the output html file "fileOut".
04/09/2009
- 04:02 PM Bug #3947: Create a module manager
- Here is the current status of the module manager.
It is currently under the tools menu. It allows scientists or deve... - 03:20 PM Bug #3947: Create a module manager
- Need to deal with caching issues with switching modules. Some objects should only be used with one module or suite a...
- 01:41 PM Bug #3968 (Resolved): XSLTActor temporary file bug
- The XSLTActor creates a temporary file in the current directory for storing the input XML file to be processed. This ...
04/08/2009
- 01:23 PM Bug #3967 (Resolved): Unable to run java -jar kepler-trunk.jar with -nogui -nocache -runwf fullworkflowpath options
- I am unable to run
java -jar kepler-trunk.jar -nogui -nocache -runwf fullworkflowpath
arguments are completel... - 12:45 PM Bug #3954: Report Designer - items of interest scrolling
- The items of interest panel now scrolls, and the nifty borders have been removed.
- 11:39 AM Bug #3943: error importing more than one actor created in one suite using kepler-1.0
- On a similar note, Vista user (trying to use two actors he created in one suite ala the hello-world tutorial using Ke...
- 11:13 AM Bug #3961: RExpression2 - support arrayType(scalar, ....) tokens
- This bug should now read: "Scalar Arrays should not be treated as String Arrays"
might end up closing it if I can't g... - 09:39 AM Bug #3961: RExpression2 - support arrayType(scalar, ....) tokens
- 1. Added support for treating these arrays as containing all string elements.
2. Looking into how we might preserve e...
04/07/2009
- 02:59 PM Bug #3963 (Resolved): RExpression2 - support mixed lists output from R
- The RExpression2 actor does not preserve the type of the elements in the following R snippet:
list(1, "b", 3)
The t... - 02:52 PM Bug #3962: RExpression2 - support RecordTokens with length=1
- Hmm, this looks familiar. I think I fixed this, or something similar in the original RExpression actor. Not sure if t...
- 02:38 PM Bug #3962 (Resolved): RExpression2 - support RecordTokens with length=1
- Ptolemy expression:
{a = 1, b = "b", c = 3}
results in a conversion error when going from Token->Java/R - 02:31 PM Bug #3961 (Resolved): RExpression2 - support arrayType(scalar, ....) tokens
- a "mixed" array token can be generated, as in the Ptolemy expression:
{1, 2.3, true}
the type then looks like this:... - 02:27 PM Bug #3960 (Resolved): RExpression2 - support arrayType(arrayType(....)) tokens
- the Ptolemy expression:
{{1}, "b", {3}}
will result in a Token with type:
arrayType(arrayType(string,1),3)
We n... - 11:28 AM Bug #3959 (Resolved): Report Designer - Highlight and select a report item panel
- Add the ability to highlight and select a specific report item panel.
- 11:23 AM Bug #3958 (Resolved): REPORT DESIGNER - Delete report items from the report designer
- When report items are dragged from the items of interest list onto the report designer canvas there is currently no w...
- 11:22 AM Bug #3809: jni actors do not work
- in Eclipse I've been launching Kepler (org.kepler.core.loader.Loader) with the following VM argument:
-Djava.library.... - 10:48 AM Bug #3957 (Resolved): Report Designer - remove items of interest from the list
- You can mark items as "reportable" from the workflow canvas - they then show up in the list "items of interest" but y...
- 10:44 AM Bug #3942: Report Designer - add/edit item labels
- some more comments from my dupe:
---
An Item Label should be dragged to an existing ReportItem.
1. The label provide... - 10:43 AM Bug #3942: Report Designer - add/edit item labels
- *** Bug 3956 has been marked as a duplicate of this bug. ***
- 10:43 AM Bug #3956: Report Designer - item label editing
- oops - duplicate bug!
*** This bug has been marked as a duplicate of bug 3942 *** - 10:34 AM Bug #3956 (Resolved): Report Designer - item label editing
- An Item Label should be dragged to an existing ReportItem.
1. The label provides a text area for editing the label.... - 10:28 AM Bug #3955 (Resolved): Report Designer - static report item: TEXT
- We can drag a "Label" static report item on to the report design canvas, but cannot edit the text.
This can be imple... - 10:21 AM Bug #3954 (Resolved): Report Designer - items of interest scrolling
- The Items of Interest panel shows a single-level tree of the "reportable items" but they run over the border in a not...
- 09:01 AM Bug #3953: Report Viewer - scroll bars
- Using BorderLayout for the ReportViewer tab - now the scroll pane is behaving as expected and allows scrolling that a...
04/06/2009
- 05:04 PM Bug #3953 (Resolved): Report Viewer - scroll bars
- The current rendering (done by FOP with GUI components) displays the report in the panel with no scroll bars. We need...
- 04:59 PM Bug #3952: Report Viewer - use Provenance Recorder to get Querable
- now using this mechanism forgetting the Queryable
- 04:58 PM Bug #3952 (Resolved): Report Viewer - use Provenance Recorder to get Querable
- The "centralized" provenance recorder configured for a workflow should be the preferred method for using provenance f...
- 04:56 PM Bug #3951 (Resolved): Report Viewer - improve TOC panel
- A table of contents showing the Items currently rendered in the Report Instance is now included in a separate panel i...
- 03:59 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- Some updates to the above todo list:
2) Provenance store configuration -- should there be a menu? Where is default
h... - 12:27 PM Bug #3948: Create new configuration system supporting modules
- See notes on wiki about existing and proposed systems.
https://kepler-project.org/developers/teams/framework/kepler-... - 12:01 PM Bug #3948 (Resolved): Create new configuration system supporting modules
- Kepler currently has at least 4 different configuration systems each using their own configuration file. This makes ...
- 12:10 PM Bug #3949 (Resolved): Get the installer working with the new build system
- The build system needs to be able to create an IzPack installer for the standard modules to install the core of keple...
- 12:07 PM Bug #3902: Running Kepler from Eclipse...No actors on right pane
- This is not a bug, but a configuration problem. I've asked David to help the user with this problem.
- 11:46 AM Bug #3947 (Resolved): Create a module manager
- Future releases of Kepler will consist of only "standard" modules which include only the basic functionality of keple...
- 10:08 AM Bug #3944: External script editors
- See also the Ptolemy bug "Editing Python Scripts is difficult"
https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?... - 09:46 AM Bug #3944: External script editors
- *** Bug 3184 has been marked as a duplicate of this bug. ***
- 09:45 AM Bug #3944 (New): External script editors
- Allow script editing (R, python, etc...) to be done outside of the basic Kepler/ptII editor in favor of <my favorite ...
- 09:46 AM Bug #3184: right-click context menu in RExpression actor
- closing this in favor of the more general bug (3944)
*** This bug has been marked as a duplicate of bug 3944 ***
04/03/2009
- 06:13 PM Bug #3943 (New): error importing more than one actor created in one suite using kepler-1.0
- Procedure: Follow the new kepler-1.0 hello-world tutorial to create an actor in a hello-world suite. Create a second ...
- 04:54 PM Bug #3900: leaving fullscreen mode gives an NPE and closes window
- This bug is pretty atrocious, I'm retargeting it to 2.0.0.
- 04:49 PM Bug #3851: Problem when building a package with the new system
- This bug has been fixed for some time. I just tested the functionality of the package command with kepler-trunk, and ...
- 04:47 PM Bug #3683: add tokenType to token_flow table in provenance sql schema
- The type has been added to the v8 schema.
- 04:44 PM Bug #3942: Report Designer - add/edit item labels
- to clarify: we're already handling this in from the RIO side of things...just need to put it in the UI for the user t...
- 03:27 PM Bug #3942 (Resolved): Report Designer - add/edit item labels
- Now that we have Items dragging around on the report, we should be able to add labels to them:
-Drag a label item fr... - 03:22 PM Bug #3941: Report Viewer - handle Text items
- added to my "test" report and it works great.
- 03:14 PM Bug #3941: Report Viewer - handle Text items
- Go figure - this is working already. Let's hear it for generic Item handling!
- 03:02 PM Bug #3941 (Resolved): Report Viewer - handle Text items
- This is similar to handling an HR, but with user-entered static text. It is different than an Item's label in that th...
- 03:13 PM Bug #3669: Tabbed pane interface for holding workflow canvas and additional GUI elements
- The documentation for the ViewPane and TabPane extension points has moved to
https://kepler-project.org/developers/te... - 03:06 PM Bug #3542: Tree View menu is too wide when opened
- The Tree View menu item has been replaced with the Workflow Outline TabPane. To get to the Tree View you now select ...
- 02:37 PM Bug #3939 (Resolved): Kepler Unique LSID Namespace generation
- The Kepler installer should generate a public/private key pair upon installation. The private key is then used to dig...
- 02:32 PM Bug #3242: dlls should not go in c:/Windows/System32
- Possibly look into this with the new installer.
- 02:31 PM Bug #3240: Fix permissions on kepler CVS files.
- We no longer use CVS. Closing this bug.
- 02:30 PM Bug #3074: Code library installation issues
- Not sure if this is something we want to get done for 2.0, but I'm targeting it there for further discussion.
- 02:28 PM Bug #3027: jar handling issues
- This should be handled through modularization of kepler. The jars that go with an actor should reside with it in its...
- 02:26 PM Bug #2319: Ptolemy build problems
- I believe the new build system renders this bug obsolete.
- 02:24 PM Bug #3696: Core Build System Tasks
- No longer using this build system.
- 02:23 PM Bug #3236: remove strict requirements for PTII and KEPLER env variables
- This has been eliminated.
- 02:23 PM Bug #3149: cannot add arbitrary jars when exporting archive
- It would be nice to get this into 2.0, but it may need to get pushed, depending on how much work we end up doing on t...
- 02:22 PM Bug #3128: Kepler devel tree can't be compiled in java 1.6.0: DBConnection problem
- Kepler 2.0 should be Java 1.6 compatible, IMHO. The main problem is that we need to work around this since older mac...
- 02:19 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- Need to make sure this functionality still works with the new modular system and new build system.
- 02:16 PM Bug #3935: Report Viewer - handle HR items
- included in the FOP sax events and xslt processing - we get it in XML/PDF/HTML
- 10:06 AM Bug #3935 (Resolved): Report Viewer - handle HR items
- There's a new StaticReportItem for horizontal rules - this should be handled in the FOP rendering and xml serialization.
- 02:03 PM Bug #2493: actor repository tracking bug
- The repository should be re-worked for the 2.0 release if we are going to include modules in it.
- 02:01 PM Bug #2448: Splash screen sometimes appears as simple white box
- I have not seen this bug in some time. Re-open it if it anyone sees it recur.
- 01:58 PM Bug #2321: merge exp files into ptolemy CVS
- Kepler's classpath override of ptolemy.vergil.basic.BasicGraphFrame has been removed from Kepler's util module. Thes...
- 01:53 PM Bug #2335: MENUS: Top-Level Menu - dynamic addition of menu items
- This issue can be looked at when the MenuMapper functionality is examined during exp file removal.
- 01:52 PM Bug #2142: new schema for data sources
- No longer pursuing this.
- 01:51 PM Bug #2145: need ontology storage system
- I don't think this functionality is currently needed in kepler.
- 01:44 PM Bug #3931: Get the R actor working with JNI
- Try to get this in for 2.0 but this might go into a non-standard module. If that's the case, this can get pushed to ...
- 01:43 PM Bug #3809: jni actors do not work
- Need to check the IDEs to make sure JNI works.
- 01:42 PM Bug #3734: Some demos no longer work after new build/repos
- Make sure all demos work with the 2.0 release. Some demos that have dependencies on non-standard modules may need to...
- 01:41 PM Bug #3483: case sensitive Leopard install fails
- Check this for the 2.0 installer.
- 01:40 PM Bug #3369: Kepler will not start (OS X 10.52) as JavaApplicationStub is not executable
- Make sure this isn't happening for the release 2.0 installer.
- 01:11 PM Bug #2374: SVG - Improve inital rendering times
- The SVG icons render immediately for me on my MacBook Pro. I think this may have been fixed when the change was made...
- 01:01 PM Bug #2324: SVG - old-style icon still displayed for certain actors
- As of 4/3/09, this is the status of this bug:
a) Still need to change all these to a royal blue dot:
(done)Paramete... - 10:43 AM Bug #3936: Report Viewer - handle Image items
- now handling file paths (strings) that are returned from provenance.
this is less than perfect since it relies on the... - 10:08 AM Bug #3936 (Resolved): Report Viewer - handle Image items
- When images (currently file paths) are passed between actors, I believe provenance captures the file contents and sto...
- 10:04 AM Bug #3934 (Resolved): Report Designer - editable Report Title field
- Need to be able to edit the title of the report. I'd recommend a simple text area to do this, then set it in the Repo...
04/02/2009
- 01:28 PM Bug #3898: update .kepler instead of removing it between versions
- I have a proposed solution to this problem. I think that the cache should be module aware. If you are running kepler-...
- 11:37 AM Bug #3932 (Resolved): Configure Actor actor context menu item missing
- The Configure Actor actor context menu item is missing (again, I think?). The analogous item for configuring ports is...
- 11:02 AM Bug #3809: jni actors do not work
- I've fixed this for the command-line build.
This bug can be closed when it's fixed for the IDEs. - 10:32 AM Bug #3909: RExpression fails with certain port names
- I think I'm more confused now. I can't seem to find an RExpression2 actor in the components list. I had assumed it ...
- 09:58 AM Bug #3931 (New): Get the R actor working with JNI
- We need to get the R actor working with JNI instead of having it make calls to the native executable. This will simp...
Also available in: Atom