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From 11/10/2003 to 12/09/2003

12/09/2003

03:46 PM Bug #1221: Systematic solution to querying data
<gabe> DBModelBeanReader problem: pulling out the entire db
<gabe> if all links are followed to the end we get way t...
P. Anderson

12/04/2003

10:05 PM Bug #1229 (New): Implement plotValidationLevel : some fields required for input
When users import a plot, certain fields should be required as a minimum. Many
of these are enforced in the databas...
Michael Lee

12/02/2003

12:07 PM Bug #1168: create "Log in as Guest" for login screens
Works on my system, code checked in. Gabriel Farrell

12/01/2003

02:15 PM Bug #794: Evaluate viewing forms and input forms for VegBank Metadata
evaulation should be on overall approach for viewing data and the collection of
forms that will then be available.
Michael Lee
02:09 PM Bug #883: Export to two flat ASCII tables with default attributes:test
Excellent. Encoding is a problem, though for strange characters. There is a way
to clue a text editor into the fact ...
Michael Lee

11/24/2003

11:24 AM Bug #1227 (Resolved): form to import graphics
need a form to import graphics. Could also import a comma separated list of
observation accessionCodes and URL for ...
Michael Lee
11:21 AM Bug #1226 (New): Rectification: need a "possible duplicate plot" alert for incoming plots
When plots are imported, need to check the system to see if there are other
plots already in vegbank which may be th...
Michael Lee
11:18 AM Bug #1225: Load USDA/ITIS 2004 plants
bug 701 deals with the link between 2 years of PLANTS. Use the methods
described and devised there to accomplish lin...
Michael Lee
11:16 AM Bug #1225 (Resolved): Load USDA/ITIS 2004 plants
we need to load a new version of USDA/ITIS plants. These need to be linked into
older concepts, in a manner as yet ...
Michael Lee
11:15 AM Bug #1224 (Resolved): Create VegBranch Lite, revise VegBranch
Create simplified version of VegBranch, perhaps in VegBranch, but just with many
options hidden.
Michael Lee
11:14 AM Bug #1223 (Resolved): Index to vegbank fields, and linkage to fields in VegBranch loading module
this should help users figure out where there data go in VegBranch Michael Lee
11:11 AM Bug #1222 (Resolved): Develop Mock-up of Prosal-Peer Review machine
This is also called the "sausage machine" and the overview is shown at the above
URL.
Michael Lee
10:38 AM Bug #909: [1730] Business Rules:Confidentiality of private lands
new model handles this. DB management should be allowed highest permissions,
including changing embargoed status of ...
Michael Lee
10:06 AM Bug #819: Revision:review forms
1
*** This bug has been marked as a duplicate of 820 ***
Michael Lee
10:06 AM Bug #820: Revisions: edit plots, cite them at a time, view them as they were before revisions
*** Bug 819 has been marked as a duplicate of this bug. *** Michael Lee
10:06 AM Bug #820: Revisions: edit plots, cite them at a time, view them as they were before revisions
*** Bug 818 has been marked as a duplicate of this bug. *** Michael Lee
10:06 AM Bug #818: [966] Revision:connect and implement form
1 bug for revisions
*** This bug has been marked as a duplicate of 820 ***
Michael Lee
10:05 AM Bug #874: TurboVeg export
*** Bug 893 has been marked as a duplicate of this bug. *** Michael Lee
10:04 AM Bug #874: TurboVeg export
*** Bug 892 has been marked as a duplicate of this bug. *** Michael Lee
10:05 AM Bug #893: [1413] TurboVeg export:define and develop XML translation
1
*** This bug has been marked as a duplicate of 874 ***
Michael Lee
10:04 AM Bug #892: [1416] TurboVeg export:test
1
*** This bug has been marked as a duplicate of 874 ***
Michael Lee
10:00 AM Bug #738: TurboVeg plot import (TV-XML to VB-XML by our stylesheet)
*** Bug 737 has been marked as a duplicate of this bug. *** Michael Lee
09:55 AM Bug #738: TurboVeg plot import (TV-XML to VB-XML by our stylesheet)
*** Bug 736 has been marked as a duplicate of this bug. *** Michael Lee
09:55 AM Bug #738: TurboVeg plot import (TV-XML to VB-XML by our stylesheet)
*** Bug 735 has been marked as a duplicate of this bug. *** Michael Lee
10:00 AM Bug #737: [550] Data loader plugins:TurboVeg plots
one TV bug is plenty
*** This bug has been marked as a duplicate of 738 ***
Michael Lee
09:58 AM Bug #846: dataset/datacart Manager
would be nice to have this sooner: too much to do Michael Lee
09:58 AM Bug #845: Query manager - list of past queries
would be nice to have this sooner: too much to do Michael Lee
09:55 AM Bug #736: [553] Data loader plugins:TurboVeg plots:Finalize TurboVeg (TV) XML
one TV bug
*** This bug has been marked as a duplicate of 738 ***
Michael Lee
09:55 AM Bug #735: [556] Data loader plugins:TurboVeg plots:stylesheet (TV XML to VB XML)
one TV bug
*** This bug has been marked as a duplicate of 738 ***
Michael Lee
09:54 AM Bug #1190: Change User Profile seems to be broken
*** Bug 1119 has been marked as a duplicate of this bug. *** Michael Lee
09:53 AM Bug #1190: Change User Profile seems to be broken
Also need to deal with cookie and main menu greeting if email address changed.
From bug 1119 (dupl of this):
When th...
Michael Lee
09:54 AM Bug #1119: Changing email address doesn't affect cookie email address
these contents pasted in 1190
*** This bug has been marked as a duplicate of 1190 ***
Michael Lee
09:46 AM Bug #720: Party Perspective Managment (plant/comm):General interface to allow
*** Bug 721 has been marked as a duplicate of this bug. *** Michael Lee
09:46 AM Bug #721: [360] Mechanism to add new plants:correlations-a
one correlation bug is enough
*** This bug has been marked as a duplicate of 720 ***
Michael Lee
09:39 AM Bug #774: Build validation package:Check required fields in XML schema
done in XSD. What isn't handled by it, bug 793 captures. Michael Lee
09:37 AM Bug #1050: validation & recitification without loading plots procedure
this is perhaps best done by loading to vegtest. Rectification without loading
will be hard.
Michael Lee
09:32 AM Bug #1050: validation & recitification without loading plots procedure
*** Bug 775 has been marked as a duplicate of this bug. *** Michael Lee
09:36 AM Bug #793: Build validation package:Default values for some fields (if null)
Also, while default values are being checked, other "pseudo-required" fields
could be checked. By this, I mean the c...
Michael Lee
09:32 AM Bug #775: Build validation package:Develop & implement validation rules
some of this bug is fixed by xsd which checks for required fields, the rest of
this is contained in bug 1050
*** Thi...
Michael Lee

11/22/2003

12:38 AM Bug #1121: Large plant queries cause Out of Memory error
not sure why this bug is mine. Michael Lee
12:35 AM Bug #840: [1070] Document the user database
vegbank 1.0.2 contains the users db Michael Lee
12:32 AM Bug #1118: strutify the certification form and possibly change the way log-in/cookie are done
make the system more robust Michael Lee
12:30 AM Bug #856: users specify view of plots and fields they want
high level of user customization: user selects fields to view on plots Michael Lee
12:29 AM Bug #787: [825] Load tree data:Test tree data loading
trees are part of XML import Michael Lee
12:26 AM Bug #837: [1100] Intellectual Property:Clock for loss of embargo
1.0.2 provides clock for embargo, expiration date required Michael Lee
12:24 AM Bug #919: Advanced IP system, user-specific filtering of data
the thing that is high priority here is ensuring that embargoed plots cannot be
viewed. Building forms to request an...
Michael Lee
12:22 AM Bug #919: Advanced IP system, user-specific filtering of data
bug 835 = form for owner to provide permission Michael Lee
10:34 PM Bug #919: Advanced IP system, user-specific filtering of data
Bob, please read through this bug and my long-winded descriptions and then, if
OK, please pass along to Mark.
Michael Lee
10:33 PM Bug #919: Advanced IP system, user-specific filtering of data
------------------------------------------------------------
--------- OK so a user wants to request permission, how ...
Michael Lee
10:26 PM Bug #919: Advanced IP system, user-specific filtering of data
----------------------------------------------------------------------------
---- THE PLOT IS CONFIDENTIAL TO SOME DE...
Michael Lee
10:20 PM Bug #919: Advanced IP system, user-specific filtering of data
One of the 5 major (critical on bugzilla so higlighted red) bugs:
We must implement the new intellectual property de...
Michael Lee
09:24 PM Bug #919: Advanced IP system, user-specific filtering of data
not critical bug to be highlighted in red, but very important Michael Lee
12:21 AM Bug #838: [1090] Intellectual Property:Specify whether embargo
in XML stream on import, whether there is an embargo Michael Lee
12:20 AM Bug #778: Build validation package - overall plan
use xsd Michael Lee
12:17 AM Bug #822: Annotation: view current notes on data + create notes
need for rectification Michael Lee
12:17 AM Bug #821: Notes: add new note form, link from views of things to note
need this for rectification Michael Lee
12:12 AM Bug #878: PCord export
*** Bug 877 has been marked as a duplicate of this bug. *** Michael Lee
12:12 AM Bug #877: [1393] PCord export:test
1
*** This bug has been marked as a duplicate of 878 ***
Michael Lee
12:11 AM Bug #723: Mechanism to add new plants (one plant at a time) - web
*** Bug 905 has been marked as a duplicate of this bug. *** Michael Lee
12:11 AM Bug #905: Business Rules:New taxa of plants and communities
handled in other bugs
*** This bug has been marked as a duplicate of 723 ***
Michael Lee
12:08 AM Bug #867: [1350] Export provides ALL data except confidential
XML now exports all data in vegbank. Authentication for viewing plots and
downloading the data handled elsewhere.
Michael Lee
12:07 AM Bug #841: Limit number of plots uploaded based on certification:test and eval
we should create and store 2 userPreferences that they cannot control, or at
least can't override: (maybe add a field...
Michael Lee
12:01 AM Bug #716: Mechanism to add new plants:Insert business rules
can't load plants via web yet. This applies more to that situation. VegBranch
checks for rules before exporting to XML.
Michael Lee
11:54 PM Bug #677: Web:Removed broken links and links to non-existent functionality
done Michael Lee
11:52 PM Bug #1074: consolodate all party tables onto one
done in vegbank 1.0.2 Michael Lee
11:52 PM Bug #1049: need XML uploader to work with Usage as child of Status
Implementation field, this has been added for ease of getting at status from usage Michael Lee
11:50 PM Bug #770: [673] :Loader rectification tools:Picklists-b
1
*** This bug has been marked as a duplicate of 771 ***
Michael Lee
11:50 PM Bug #771: Loader rectification tools:Picklists: closed (and open?)
*** Bug 770 has been marked as a duplicate of this bug. *** Michael Lee
11:49 PM Bug #771: Loader rectification tools:Picklists: closed (and open?)
*** Bug 769 has been marked as a duplicate of this bug. *** Michael Lee
11:49 PM Bug #769: [676] :Loader rectification tools:Picklists-c
1
*** This bug has been marked as a duplicate of 771 ***
Michael Lee
11:48 PM Bug #762: [636] :Loader rectification tools:PlaceNames-c
1
*** This bug has been marked as a duplicate of 763 ***
Michael Lee
11:48 PM Bug #763: Loader rectification tools:NamedPlace (from place)
*** Bug 762 has been marked as a duplicate of this bug. *** Michael Lee
11:47 PM Bug #763: Loader rectification tools:NamedPlace (from place)
*** Bug 761 has been marked as a duplicate of this bug. *** Michael Lee
11:47 PM Bug #761: [633] :Loader rectification tools:PlaceNames-b
1
*** This bug has been marked as a duplicate of 763 ***
Michael Lee
11:46 PM Bug #758: [643] :Loader rectification tools:TaxonInterpretations-b
1
*** This bug has been marked as a duplicate of 759 ***
Michael Lee
11:46 PM Bug #759: Loader rectification tools: PlantConcept (from TaxonInterp and TaxonAlt)
*** Bug 758 has been marked as a duplicate of this bug. *** Michael Lee
11:45 PM Bug #759: Loader rectification tools: PlantConcept (from TaxonInterp and TaxonAlt)
*** Bug 756 has been marked as a duplicate of this bug. *** Michael Lee
11:45 PM Bug #756: [646] :Loader rectification tools:TaxonInterpretations-c
1
*** This bug has been marked as a duplicate of 759 ***
Michael Lee
11:45 PM Bug #754: Loader rectification tools: References
*** Bug 773 has been marked as a duplicate of this bug. *** Michael Lee
11:44 PM Bug #754: Loader rectification tools: References
*** Bug 772 has been marked as a duplicate of this bug. *** Michael Lee
11:45 PM Bug #773: [666] :Loader rectification tools:Citations-c
1
*** This bug has been marked as a duplicate of 754 ***
Michael Lee
11:44 PM Bug #772: [663] :Loader rectification tools:Citations-b
1
*** This bug has been marked as a duplicate of 754 ***
Michael Lee
11:43 PM Bug #757: [653] :Loader rectification tools:CommunityInterpretations-b
1
*** This bug has been marked as a duplicate of 760 ***
Michael Lee
11:43 PM Bug #760: Loader rectification tools: CommConcepts (from CommInterp)
*** Bug 757 has been marked as a duplicate of this bug. *** Michael Lee
11:42 PM Bug #760: Loader rectification tools: CommConcepts (from CommInterp)
*** Bug 755 has been marked as a duplicate of this bug. *** Michael Lee
11:42 PM Bug #755: [656] :Loader rectification tools:CommunityInterpretations-c
1
*** This bug has been marked as a duplicate of 760 ***
Michael Lee
11:40 PM Bug #745: [623] :Loader rectification tools:Party-b
one
*** This bug has been marked as a duplicate of 746 ***
Michael Lee
11:40 PM Bug #746: Loader rectification tools:Party
*** Bug 745 has been marked as a duplicate of this bug. *** Michael Lee
11:39 PM Bug #746: Loader rectification tools:Party
*** Bug 744 has been marked as a duplicate of this bug. *** Michael Lee
11:39 PM Bug #744: [626] :Loader rectification tools:Party-c
one is enough
*** This bug has been marked as a duplicate of 746 ***
Michael Lee
11:38 PM Bug #748: Systematic approach to rectification
one of 5 major bugs (or so) and thus critical and highlighted red.
We will use the notes tables to populate informat...
Michael Lee
11:23 PM Bug #717: [375] Mechanism to add new plants:manage plants you own-b
one plant management bug is enough
*** This bug has been marked as a duplicate of 719 ***
Michael Lee
11:23 PM Bug #719: manage plants you own
*** Bug 717 has been marked as a duplicate of this bug. *** Michael Lee
11:11 PM Bug #719: manage plants you own
Irregular taxa now handled without adding new plants, this becomes much less
important
Michael Lee
11:12 PM Bug #747: [615] :Loader rectification tools-b
redundant and useless bug Michael Lee
11:00 PM Bug #1077: document in CVS: Preload the database with standard methods, references, journals
in src/sql for now. Michael Lee
10:58 PM Bug #1221 (Resolved): Systematic solution to querying data
We need to figure out a systematic way of easily creating new queries to query
data using fields that can somewhat e...
Michael Lee
10:50 PM Bug #739: QA for New XML (1.0.2) loading (Lee), then Fix errors in loading process (Farrell/Anderson)
*** Bug 743 has been marked as a duplicate of this bug. *** Michael Lee
09:15 PM Bug #739: QA for New XML (1.0.2) loading (Lee), then Fix errors in loading process (Farrell/Anderson)
need to do this again for new XML Michael Lee
10:50 PM Bug #743: [520] Data loader plugins:XML plots:Values for required fields missing
duplicate!
*** This bug has been marked as a duplicate of 739 ***
Michael Lee
09:59 PM Bug #891: QA NPS plots on vegbank
we actually want 2000 plots in vegbank by end of Feb. Don't need to be NPS
plots. Perhaps some of the failed NPS pl...
Michael Lee
09:57 PM Bug #883: Export to two flat ASCII tables with default attributes:test
ML needs to test this and if so, confirm&close this bug and 864 Michael Lee
09:55 PM Bug #1220: Need systematic approach to viewing all data in database
*** Bug 847 has been marked as a duplicate of this bug. *** Michael Lee
09:22 PM Bug #1220: Need systematic approach to viewing all data in database
Making the 5 "major" bugs critical so that bugzilla highlights them in red, how
nice.
Michael Lee
09:19 PM Bug #1220 (Resolved): Need systematic approach to viewing all data in database
This could be done with XML-XSL, but we would prefer give it a shot with
javabeans which are more efficient. Curren...
Michael Lee
09:55 PM Bug #847: evaluate: User view & output stylesheets
this bug has been passed by the better and higher goals of the very humble bug 1220
*** This bug has been marked as ...
Michael Lee
09:53 PM Bug #1140: Better delimit results of certification request so they are more readable
Much progress was made on this bug. The request was sent to panel@vegbank.org,
which is great. The format looked go...
Michael Lee
09:50 PM Bug #863: Evaluate: Simple Query (rewrite views for query)
I think this query is great now. Time to resolve this bug. Improvement
suggestions can be made on bugs 1191, 860
Michael Lee
09:29 PM Bug #831: [1016] Management accounts??
one is enough
*** This bug has been marked as a duplicate of 833 ***
Michael Lee
09:29 PM Bug #833: Management page needed with full ability to modify accounts
*** Bug 831 has been marked as a duplicate of this bug. *** Michael Lee
09:28 PM Bug #675: Evaluate Tutorial
great progress has been made with this. There is now a place to put both pop-up
help html files as well as a more co...
Michael Lee
09:25 PM Bug #1014: Cover methodology : foliar or canopy cover - add field?
done, added to obseration in vegbank 1.0.2 Michael Lee
09:13 PM Bug #1169: Upgrade VegBranch to new 1.0.2 Vegbank data model
model changes mean VegBranch changes. Need to perhaps have a list for VegBranch
updates, as users "out there" with V...
Michael Lee
09:10 PM Bug #824: Make website deal with user tables in vegbank, not framework
Once again changing the nature and summary of this bug. Here is the task of
making the website work with the correct...
Michael Lee
09:06 PM Bug #1219 (Resolved): VegBank 1.0.2 model - implemented
We need to upgrade to version 1.0.2 for vegbank.
The model needs to be finalized (done: see Nov 21 version of db_m...
Michael Lee
08:56 PM Bug #1218 (Resolved): Get really new XML importing (version 1.0.2), allow zipped
Update the current loader to import the new XML. Included in this bug is to get
compressed files to unzip and load.
Michael Lee

11/13/2003

04:17 PM Bug #1140: Better delimit results of certification request so they are more readable
Don F-L has noted that the end of the cert request is a bit tricky to read. It
currently looks like this:
nvcExpRegi...
Michael Lee

11/12/2003

10:30 AM Bug #824: Make website deal with user tables in vegbank, not framework
I see no problems with the ERD id=89 particularily in relation to user,
certification, userPermissions and embargo, u...
Gabriel Farrell

11/11/2003

02:15 PM Bug #1022: Eval: Form to calculate summary of multiple plots
2 different versions of this:
1) show plots side by side in same table
2) show summary stats (averages) across tables
Michael Lee
02:13 PM Bug #765: [705] :Complete ACCESS tool for input:test and evaluate VegBranch
QA QC of VegBranch also another bug
*** This bug has been marked as a duplicate of 1169 ***
Michael Lee
02:13 PM Bug #1169: Upgrade VegBranch to new 1.0.2 Vegbank data model
*** Bug 765 has been marked as a duplicate of this bug. *** Michael Lee
02:12 PM Bug #833: Management page needed with full ability to modify accounts
Page needed where managers (highest cert. level) can:
view all users
certify users
delete plots
delete users
restart...
Michael Lee
02:09 PM Bug #702: Enter basic PLANTS:Evalute implementation of PLANTS data-c
basic plants are in VegBank and loaded properly Michael Lee
02:07 PM Bug #823: Annotation: query for notes
Form to allow users to find notes that may interest them, such as from a
particular person or with particular text or...
Michael Lee
02:06 PM Bug #822: Annotation: view current notes on data + create notes
Need to incorporate views of notes in views of other data in the system Michael Lee
02:06 PM Bug #821: Notes: add new note form, link from views of things to note
Need a form to add notes to data. Should be linked from views of other data,
such as plot-view, so that user can req...
Michael Lee
02:03 PM Bug #859: [1273] Nested and advanced query:revise more
one bucket for nested query is enough
*** This bug has been marked as a duplicate of 860 ***
Michael Lee
02:03 PM Bug #860: Flexible plot query, user powered: DEMO
*** Bug 859 has been marked as a duplicate of this bug. *** Michael Lee
02:03 PM Bug #860: Flexible plot query, user powered: DEMO
*** Bug 858 has been marked as a duplicate of this bug. *** Michael Lee
02:03 PM Bug #858: [1276] Nested and advanced query:implement
one bucket for nested query is enough
*** This bug has been marked as a duplicate of 860 ***
Michael Lee
02:00 PM Bug #701: Enter 2 years of USDA PLANTS:Possible conversion to ITIS standards
load 2nd year of USDA PLANTS and link to current plants in VegBank (2002) Michael Lee
01:49 PM Bug #915: Performance tuning
need to be working on this sooner. Lots of things go under this heading.
Caching. More memory. Other ideas to imp...
Michael Lee
12:15 PM Bug #824: Make website deal with user tables in vegbank, not framework
more info, akin to data-dictionary on its way Michael Lee
12:13 PM Bug #824: Make website deal with user tables in vegbank, not framework
Mark, I'll take this bug for now, with focus on model change implications.
Sounds like the certification email is wo...
Michael Lee
12:11 PM Bug #824: Make website deal with user tables in vegbank, not framework
*** Bug 836 has been marked as a duplicate of this bug. *** Michael Lee
12:11 PM Bug #836: database redesign for Intellectual Property Table for permissions for embargoed data
changes to the model will be posted to bug 824, including changes for
intellectual property
*** This bug has been ma...
Michael Lee

11/10/2003

03:48 PM Bug #1114: Logging system needs to be upgraded
let me at 'em P. Anderson
 

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