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From 04/03/2004 to 05/02/2004

04/30/2004

02:23 PM Bug #1550 (New): Missing images in eml doc in Morpho
The eml documentation that is generated for inclusion in the Morpho help
documentation does not display the element ...
Dan Higgins
02:19 PM Bug #1549 (New): Problem with corrupt beta6 packages
For some reason, a few older datapackages (e.g. higgins.2042.9) which contain
numerous data files are corrupt (meani...
Dan Higgins
11:51 AM Bug #1547 (New): incorporate eml parser into Morpho
Currently, a full check of the eml created by Morpho is not done until a package
is submitted to metacat where the s...
Dan Higgins

04/29/2004

05:07 PM Bug #1541: image display problem with image data from beta6 docs
This bug was NOT caused by the transformation, but rather by the way data files
associated with a beta6 package were ...
Dan Higgins
03:23 PM Bug #1541: image display problem with image data from beta6 docs
On Apr 28, 2004, at 10:34 AM, Christopher Jones wrote:
additional comments from Chris Jones:
The last EML2b6 bug I...
Dan Higgins
03:19 PM Bug #1541 (Resolved): image display problem with image data from beta6 docs
Images that were saved as part of eml-beta6 packages do not display properly
after transformation to eml2 in Morpho ...
Dan Higgins
03:16 PM Bug #1539: <keywordSet> is transformed incorrectly from EML2b6 to EML2
revised the style sheet to loop over keyWordSets so that eaxh keywordSet is
independently transformed.
Dan Higgins
12:46 PM Bug #1540: problem with moving beta6 data to local machine
The problem was a logic error in the serializeData command in the
AbstractDataPackage class. Data was being moved to ...
Dan Higgins
12:43 PM Bug #1540 (Resolved): problem with moving beta6 data to local machine
Cris Jones reported a problem where data associated with older beta6 data
packages could be displayed (from PISCO me...
Dan Higgins

04/28/2004

10:48 AM Bug #1539 (Resolved): <keywordSet> is transformed incorrectly from EML2b6 to EML2
The tansformation stylesheets from EML2b6 to EML2 incorrectly handle keywords.
An example:
In EML2b6 we have:
...
Chris Jones
08:56 AM Bug #1536: Special character problems
This problem has been fixed within Morpho by adding a new 'getDOMTreeAsString'
routine which include the 'normalize' ...
Dan Higgins

04/27/2004

08:51 PM Bug #1537: whitespace causes incorrect XSL conversion of eml2beta6 to eml2 in <unit>
In order to do correct comparisons of STMML unit dictionary strings with
units that have incorrectly introduced leadi...
Chris Jones
08:37 PM Bug #1537 (Resolved): whitespace causes incorrect XSL conversion of eml2beta6 to eml2 in <unit>
The attribute dialogs in Morpho 1.4 allowed a researcher to enter a freetext
'unit' for typing a specific data colum...
Chris Jones
08:02 AM Bug #1536 (Resolved): Special character problems
Users may import 'special characters' such as the degree symbol or the micro
symbol (Greek mu) into data packages, e...
Dan Higgins

04/26/2004

05:05 PM Bug #1515: taxon dialog checks input but allows invalid input
fixed. now, a user cant leave a cell after entering some invalid data. invalid
entries, if any at all, are discarded...
Perumal Sambasivam
05:02 PM Bug #1520: taxo coverage data entry error
bug fixed. the data validation in the taxon page is better now. Now, you cannot
leave a cell till a valid data is en...
Perumal Sambasivam
04:59 PM Bug #1535: role disappears under certain editing circumstances
Bug fixed. The entire party subtree was being replaced earlier and hence the
role information was lost. Now we can s...
Perumal Sambasivam
11:30 AM Bug #1535 (Resolved): role disappears under certain editing circumstances
1) open an existing datapackage, or create one from scratch
2) documentation -> research project
3) add a party to ...
Matthew Brooke
10:23 AM Bug #1534: DPW & Project page: Edit button always edits last Party in list, irrespective of selection
now call updateDOMFromPartiesList() from onRewind() and onAdvance() actions instead of from new
and edit button acti...
Matthew Brooke
10:22 AM Bug #1528: Move Up & Move Down buttons on party lists do not update DOM immediately
now call updateDOMFromPartiesList() from onRewind() and onAdvance() actions to fix this problem Matthew Brooke

04/25/2004

10:16 PM Bug #1534 (Resolved): DPW & Project page: Edit button always edits last Party in list, irrespective of selection
In pages with party lists (CustomList displaying parties such as Owner, Contact etc), if the user hits
"edit", the ...
Matthew Brooke

04/22/2004

11:24 AM Bug #1533 (New): Support for retrieving online data into Morpho
Add support for retrieving online data into Morpho for local viewing (i.e. when
online urls retrieve a text data st...
Saurabh Garg
11:18 AM Bug #1532 (Resolved): Add support for "cloning" packages to support content re-use
Add support for "cloning" packages to support content re-use (i.e. as
independent new packages, not existing packag...
Saurabh Garg
11:16 AM Bug #1531 (Resolved): Import local eml documents to create new data packages
Add support for importing local eml documents to create new data packages,
along with tabular data they describe (i...
Saurabh Garg
11:01 AM Bug #458: Need to configure Morpho to accept stream-based result sets
JIng has added code to implement this and it is in Morpho 1.5.0. May need some
further refinements
Dan Higgins
11:00 AM Bug #1488: Taxon page citations list surrogates not updated to reflect remote reference edits
fixed in head of CVS Dan Higgins
10:17 AM Bug #1488: Taxon page citations list surrogates not updated to reflect remote reference edits
This bug still exists in Morpho 1.5.0. This moved to 1.6 target,although I think
it is fixed already in the CVS head
Dan Higgins
09:54 AM Bug #1523: At least one Moprho Users Guide DPW Help file screen shot wrong..
A number of screens were updated. Dan Higgins
09:42 AM Bug #1528 (Resolved): Move Up & Move Down buttons on party lists do not update DOM immediately
Move Up & Move Down buttons on party lists (in wizard, citation & project) do
not update DOM immediately - this mean...
Matthew Brooke
09:38 AM Bug #1526: Delete party number can cause empty owner
fixed - added updateDOMFromList call to add and edit action Matthew Brooke

04/21/2004

12:43 PM Bug #1508: New Data Table Wizard: Last Step does not add Table every time
Moving to 1.6 release since we cannot reproduce the problem. Dan Higgins
12:43 PM Bug #1504: Intermittant problem: DPW Finish Wizard / Enter New Table
Moving to 1.6 release since we cannot reproduce the problem. Dan Higgins
11:45 AM Bug #1525: ?? tags in Intro To Metadata help document are deactivated
It was a smart quotes problem. Now fixed. Saurabh Garg
11:32 AM Bug #1525: ?? tags in Intro To Metadata help document are deactivated
This is likely a problem with exporting from word and not replacing the "smart
quotes" with a standard character code.
Matt Jones
09:59 AM Bug #1525 (Resolved): ?? tags in Intro To Metadata help document are deactivated
This is REALLY a nit. But as I was reviewing this document, I noticed ??
character strings surounding words in seve...
Rick Reeves
11:15 AM Bug #1526 (Resolved): Delete party number can cause empty owner
Here is the steps to reproduce the bug:
1) In onwer page, click add button and party page will be shown. In party pa...
Jing Tao

04/20/2004

03:04 PM Bug #1524: People and Organization/Contacts screen missing from Morpho User Guide help`
There are several screen shots that are not present in the RC2 package (although
they ARE in the helpjar). This was a...
Dan Higgins
02:26 PM Bug #1524 (Resolved): People and Organization/Contacts screen missing from Morpho User Guide help`
The Morpho DPW People and Organizations/Contacts screen shot does not appear
in the Morpho RC2 Morpho User Guide .
Rick Reeves
03:00 PM Bug #1487: Citation Page: Authors List move up/down button problems on mac
moved components around so buttons show Dan Higgins
02:20 PM Bug #1523 (Resolved): At least one Moprho Users Guide DPW Help file screen shot wrong..
I downloaded RC2 at 11:00 Today Apr 20.
The 'New Data Package Wizard / Welcome to the Data Package Wizard' screen ...
Rick Reeves
01:34 PM Bug #1521: Column name labels in Morpho Data Table Display disappear
Multiline column headers are implemented using html label. The problem is that
Java's html renderer inserts a blink l...
Dan Higgins
12:23 PM Bug #1517: invalid entry allowed in URL fields
bug fixed (see previous comment) Dan Higgins
12:22 PM Bug #1517: invalid entry allowed in URL fields
Added test to the Online URL element that checks if value is a valid URL (using
the Java URL class).
Dan Higgins
10:47 AM Bug #1520: taxo coverage data entry error
The indicated error does show up in the system output stream but is not apparent
to the user (i.e. no dialog boxes po...
Dan Higgins
10:01 AM Bug #1516: display should actual instead of escaped characters
found where 'normalize' was called twice and removed call Dan Higgins
08:54 AM Bug #1516: display should actual instead of escaped characters
Interestingly enough, the display used to work OK - really!
It looks like we are now running the normalize method tw...
Dan Higgins
08:05 AM Bug #1508: New Data Table Wizard: Last Step does not add Table every time
Comments here similar to 1504. We have been unable to reproduce this error. Dan Higgins
08:04 AM Bug #1504: Intermittant problem: DPW Finish Wizard / Enter New Table
On April 19, Dan, Jing, and Chad all tried to reproduce this error, without
success! The Wizard was reconfigured to a...
Dan Higgins

04/19/2004

04:14 PM Bug #1519: geographic coverage screen needs lat/long order checking
fixed by swapping east/west values Dan Higgins
10:45 AM Bug #1519 (Resolved): geographic coverage screen needs lat/long order checking
need to check the order of the E/W values so that the lesser one comes first.
the bug is that if the lesser one com...
Chad Berkley
04:13 PM Bug #1476: add additional locations for geographic coverage list
finished by Chad Dan Higgins
04:12 PM Bug #1503: 3 bugs in owner, contact, and associated party steps of the dpw
seems to be fixed in RC2 (Andrea)
Could not replicate (Higgins, et al)
Dan Higgins
04:11 PM Bug #1500: Error message in dpw steps 4-9 of 15
seems to be fixed in RC2 (Andrea)
Could not replicate (Higgins, et al)
Dan Higgins
03:54 PM Bug #1522 (In Progress): Morpho Update
It would be cool if the user knew there was a new version of Morpho available
for download from the ecoinformatics....
Eric Fegraus
03:04 PM Bug #1504: Intermittant problem: DPW Finish Wizard / Enter New Table
Eric Fegraus had a similar problem, but no one else seems able to replicated!
Rick has since created at least 3 packa...
Dan Higgins
03:02 PM Bug #1518: Data Table Import Wizard
Is this something that needs to be handled in the documentation? (Dan Higgins) Dan Higgins
10:00 AM Bug #1518 (Resolved): Data Table Import Wizard
More examples are needed here...what categories/units/precision are species
presence/abscene (e.g. 0 or 1), plot nu...
Eric Fegraus
02:57 PM Bug #1511: Installer does not have all UserGuide images
revised installer script Dan Higgins
02:51 PM Bug #1513: Bug in the handling of the "additionalMetadata" elements by the EML Editor
Bug was due to empty 'description' tag under additionalMetadata. Editor trimmed
the subtree because it trims all subt...
Dan Higgins
08:23 AM Bug #1513 (Resolved): Bug in the handling of the "additionalMetadata" elements by the EML Editor
There seems to be a problem in the way the EML editor handles
the "additionalMetadata" elements.
In particular, ...
Perumal Sambasivam
12:04 PM Bug #1521 (Resolved): Column name labels in Morpho Data Table Display disappear
Displaying a data table for an existing Morpho data package using the 'tabbed
dialog' display. The column widths ar...
Rick Reeves
10:47 AM Bug #1520 (Resolved): taxo coverage data entry error
when you change the rank in the taxo table in the dpw then hit tab to the name
field, you get the following error, n...
Chad Berkley
10:02 AM Bug #1510: Custom unit problems
fixed by Peru Dan Higgins
09:52 AM Bug #1517 (Resolved): invalid entry allowed in URL fields
I was allowed to put invalid content into the URL fields of the dpw. Here's the
error upon validation:
Validatio...
Chad Berkley
09:47 AM Bug #1516 (Resolved): display should actual instead of escaped characters
in the main morpho dataset viewing screen, any character that is automatically
escaped by morpho (i.e. changed to an...
Chad Berkley
09:43 AM Bug #1515 (Resolved): taxon dialog checks input but allows invalid input
I pasted the text
>>>>>
<
&
"
'
into a taxon name. it told me that was invalid input and that i needed to...
Chad Berkley
08:29 AM Bug #1514 (Resolved): Citation DPW
Adding in citations during the taxonomic screen. The "Mo...." buttons are a
little confusing? Why are there two of ...
Eric Fegraus
08:20 AM Bug #1512 (Resolved): Taxon Import
Going through DPW RC2. Import taxa from the taxonomic screen doesn't clearly
say when or how you import a species ...
Eric Fegraus

04/18/2004

02:54 PM Bug #1511 (Resolved): Installer does not have all UserGuide images
The installer does not include all the images in the docs/user/images directory.
Need to revise the list of instal...
Dan Higgins

04/17/2004

08:55 PM Bug #1510 (Resolved): Custom unit problems
There are several problems with the custom unit handler for an attribute. When a
custom unit is created, it does now...
Dan Higgins
02:41 PM Bug #1501: In dpw, "Add" causes the dpw screen to go backward, behind the main morpho screen
I have not been able to reproduce this bug (Sid may have fixed it.) Dan Higgins
02:39 PM Bug #1500: Error message in dpw steps 4-9 of 15
This problem cannot be reproduced, as of yet. Dan Higgins
02:25 PM Bug #1381: keyword set editor efficiency problems
*** Bug 1498 has been marked as a duplicate of this bug. *** Dan Higgins
02:25 PM Bug #1498: movement of keywords and people in dpw is problemmatic
This is really a function of the underlying custom list component. ALready have
bug 1381 to handle this
*** This bu...
Dan Higgins
02:23 PM Bug #1502: Text on dpw screen 4 of 15 makes it sound like associated party info is required
The fact that some party types are required is indicated on the individual pages. Dan Higgins
02:16 PM Bug #1496: "window" menu on main morpho screen does not list all open windows
DataPackageWizard is a different type of window (not UIContoller based).
Probably would be nice to have appear in Win...
Dan Higgins
02:10 PM Bug #1499: some morpho windows not displayed in my taskbar
Thus is because some 'windows' are modal dialogs and such dialogs never show up
in the taskbar. Their parent is on th...
Dan Higgins
02:06 PM Bug #1497: dpw step 3 of 15 needs more clarity about internal categorization
This seems clear to me. Keep for later discussion Dan Higgins
02:01 PM Bug #1507: New Data Table Wizard: Definition of new Unit Type
the whole custom unit screen probably needs additional label/tooltip help; and
discussion is needed in Morpho documen...
Dan Higgins
01:58 PM Bug #1506: New Datatable Wizard: Defining custom units - new unit not persistant between selections...
fixed by Peru (changed so that custom units are now available for reuse within a
package).
Dan Higgins
01:54 PM Bug #1509: binary data files loaded from metacat are corrupted
fixed by adding a new method to MetacatDataStore which does not filter file.
This method is called when data files ar...
Dan Higgins
11:43 AM Bug #1509: binary data files loaded from metacat are corrupted
Appears that problem is with Morpho's saving of metacat response to a file.
Looks like filter for special xml-invalid...
Dan Higgins
11:39 AM Bug #1509 (Resolved): binary data files loaded from metacat are corrupted
Tested sending a data package with binary data file (image) to metacat, then
deleting local package. This forces a d...
Dan Higgins

04/16/2004

05:46 PM Bug #1508 (Resolved): New Data Table Wizard: Last Step does not add Table every time
After completing all the steps to the New DataTable Wizard, I click the
blue text: 'or click here to finish this wi...
Rick Reeves
03:36 PM Bug #1507 (In Progress): New Data Table Wizard: Definition of new Unit Type
New Data Table Wizard: I am defining a new custom unit and am asked to Enter
the name of the new unit type. I am un...
Rick Reeves
03:36 PM Bug #1504: Intermittant problem: DPW Finish Wizard / Enter New Table
so far, unable to reproduce this problem! Dan Higgins
03:23 PM Bug #1504: Intermittant problem: DPW Finish Wizard / Enter New Table
to date, several of us have been unable to reproduce this problem Dan Higgins
03:31 PM Bug #1470: Morpho User's Guide Problems
specific bugs mentioned here have been addressed.
Documentation is still subject to review.
Dan Higgins
03:29 PM Bug #1358: How to handle multiple repeated delimiters
for eml2.0.0 added 'additionalMetadata' tag with 'describes' pointed to a
physical' id of the table and a tag (<conse...
Dan Higgins
03:29 PM Bug #1506 (Resolved): New Datatable Wizard: Defining custom units - new unit not persistant between selections...
I am importing a data table consisting of several colums of image data
into an existing data package using the New D...
Rick Reeves
03:29 PM Bug #1490: problems importing space delimited data file
fixed by adding 'additionalMetadata' tag with 'describes' pointed to a physical'
id of the table and a tag (<consecut...
Dan Higgins
01:46 PM Bug #1505: export function doesn't work in open dialog or search frame
In ExportComand class, code was added to check the package location before
export. The code set location is only done...
Jing Tao
11:18 AM Bug #1505 (Resolved): export function doesn't work in open dialog or search frame
When you try to export a package to disk in open dialog or search frame, you
will get an erro. For export to a direc...
Jing Tao

04/15/2004

05:27 PM Bug #1504 (Resolved): Intermittant problem: DPW Finish Wizard / Enter New Table
When adding a new data package with DPW, I get to the last screen,
where I can click 'Click to finish wizard and ad...
Rick Reeves
04:28 PM Bug #1495: Typos/grammar errors in morpho installer "please read" text
typos, etc fixed Dan Higgins
12:37 PM Bug #1495 (Resolved): Typos/grammar errors in morpho installer "please read" text
1) "…and a list ofthe new features…": needs a space between "of" and "the"
2) "This wizard also allows one to use th...
Andrea Andrea
04:15 PM Bug #1494: Typo: "prefrerred" in installer "please read" text
typo fixed Dan Higgins
12:28 PM Bug #1494 (Resolved): Typo: "prefrerred" in installer "please read" text
Andrea Andrea
04:11 PM Bug #1491: Grammar: missing word in morpho installer "please read" text
type fixed Dan Higgins
02:44 PM Bug #1491: Grammar: missing word in morpho installer "please read" text
*** Bug 1492 has been marked as a duplicate of this bug. *** Saurabh Garg
02:43 PM Bug #1491: Grammar: missing word in morpho installer "please read" text
*** Bug 1493 has been marked as a duplicate of this bug. *** Saurabh Garg
12:26 PM Bug #1491 (Resolved): Grammar: missing word in morpho installer "please read" text
"The user can also edit many of the features of a document using forms the
Data Package Wizard, called up from the ...
Andrea Andrea
02:51 PM Bug #1490: problems importing space delimited data file
see bug #1358 Dan Higgins
02:49 PM Bug #1490: problems importing space delimited data file
The validation problem has been fixed with the unit fix (Bug 1489), but there is
still a display problem when the dat...
Dan Higgins
12:03 PM Bug #1490: problems importing space delimited data file
The validation problem seems to be that it is leaving out the 'unit' field for
the two ratio attributes, even though ...
Matt Jones
11:53 AM Bug #1490 (Resolved): problems importing space delimited data file
Attempting to import a space delimited data file with multiple spaces between
each column results in 1) a view that ...
Matt Jones
02:44 PM Bug #1492: Grammar: missing word in morpho installer "please read" text
Copy of bug 1491
*** This bug has been marked as a duplicate of 1491 ***
Saurabh Garg
12:26 PM Bug #1492 (Resolved): Grammar: missing word in morpho installer "please read" text
"The user can also edit many of the features of a document using forms the
Data Package Wizard, called up from the ...
Andrea Andrea
02:43 PM Bug #1493: Grammar: missing word in morpho installer "please read" text
Copy of bug 1491
*** This bug has been marked as a duplicate of 1491 ***
Saurabh Garg
12:26 PM Bug #1493 (Resolved): Grammar: missing word in morpho installer "please read" text
"The user can also edit many of the features of a document using forms the
Data Package Wizard, called up from the ...
Andrea Andrea
02:24 PM Bug #1489: invalid attribute eml produced
Bug fixed; lookup in list used the formated text (initial caps, etc) rather than
the actual text in unitDictionary. T...
Dan Higgins
10:41 AM Bug #1489 (Resolved): invalid attribute eml produced
the data creation wizard is producing invalid eml for ratio and interval
attributes. the unit element is required.
...
Chad Berkley
02:23 PM Bug #1498: movement of keywords and people in dpw is problemmatic
And also for personnel of a "larger umbrella research project". Andrea Andrea
02:09 PM Bug #1498: movement of keywords and people in dpw is problemmatic
This also occurs for lists of owners, contacts, or associated parties in the
dpw.
Andrea Andrea
01:33 PM Bug #1498 (Resolved): movement of keywords and people in dpw is problemmatic
DPW step 3 of 15, after adding keywords and wanting to move them in
the "define keyword set" screen, you have to se...
Andrea Andrea
02:22 PM Bug #1501: In dpw, "Add" causes the dpw screen to go backward, behind the main morpho screen

I was only able to reproduce the bug once. Anyway, I added code in
ModalDialog.java to push the parent window to fr...
Saurabh Garg
02:03 PM Bug #1501 (Resolved): In dpw, "Add" causes the dpw screen to go backward, behind the main morpho screen
After clicking "Add" to add a keyword list or add a person's name/contact
info, the new window appears on top of th...
Andrea Andrea
02:20 PM Bug #1503: 3 bugs in owner, contact, and associated party steps of the dpw
These also occur after adding personnel info as part of a "larger umbrella
research project".
Andrea Andrea
02:18 PM Bug #1503 (Resolved): 3 bugs in owner, contact, and associated party steps of the dpw
1) Warning message pops up ("Warning! ERROR: Cannot Delete!") when trying to
delete an entry.
2) After choosing "S...
Andrea Andrea
02:12 PM Bug #1502 (Resolved): Text on dpw screen 4 of 15 makes it sound like associated party info is required
Andrea Andrea
02:07 PM Bug #1500: Error message in dpw steps 4-9 of 15
I discovered now that this error message occurs when moving between steps 4-9
in the dpw, as well as after adding co...
Andrea Andrea
01:51 PM Bug #1500 (Resolved): Error message in dpw steps 4-9 of 15
When going from step 4 to step 5 of the dpw, the following error message pops
up: "Warning! ERROR: Cannot update!"....
Andrea Andrea
01:48 PM Bug #1499 (Resolved): some morpho windows not displayed in my taskbar
The main morpho window as well as the dpw windows for steps 1-15 DO show up in
the taskbar at the bottom of my comp...
Andrea Andrea
01:25 PM Bug #1497 (In Progress): dpw step 3 of 15 needs more clarity about internal categorization
Dpw step 3 of 15: “Thesauri may also be used for internal categorization”.
Unclear what internal categorization means.
Andrea Andrea
01:17 PM Bug #1496 (In Progress): "window" menu on main morpho screen does not list all open windows
Clicking on the "Window" menu on the main screen, only "Morpho" is listed, not
the dpw window, which is open and sh...
Andrea Andrea
12:16 PM Bug #1470: Morpho User's Guide Problems
Problems in (1) still occur in 1.5.0rc1. Images still broken in the "Creating a
new Data Package" section.
Matt Jones
10:39 AM Bug #1488 (Resolved): Taxon page citations list surrogates not updated to reflect remote reference edits
0) Open the datapkg wizard. enter a creator and a contact. Advance to the
taxonomic coverage page, then:
1) on th...
Matthew Brooke

04/14/2004

09:41 PM Bug #1487 (Resolved): Citation Page: Authors List move up/down button problems on mac
In Mac OS X, on the Citation Page, the Authors List move up button has text truncated to read "Mov..."
and because b...
Matthew Brooke
03:09 PM Bug #1484: Taxonomic Coverage Page not being populated properly
the wrong xPath was being passed to the setPageData() method. This was causing
the problem. Corrected it now.
Perumal Sambasivam
01:26 PM Bug #1454: custom units not inserted into data package
fixed the window ordering problem by not setting parent to dialog to wrong window.
other custom unit stuff appears t...
Dan Higgins
10:29 AM Bug #1486: editing referenced party on project screen loses role
Bug fixed;
Problem was the same as previously encountered with lossing the role in the
AssociatedParty dialog. Priva...
Dan Higgins
09:26 AM Bug #1486 (Resolved): editing referenced party on project screen loses role
Whn adding a research project in the DPW, a party was chosen from the references
list and a role selected. When ret...
Matt Jones

04/13/2004

09:51 PM Bug #1484: Taxonomic Coverage Page not being populated properly

status: taxon dialog works ok in wizard, and works OK for an existing datapkg, provided it doesn't
already contain ...
Matthew Brooke
05:43 PM Bug #1484 (Resolved): Taxonomic Coverage Page not being populated properly
if you have a dataset that already has Taxon coverage data, and open the taxon
editor from the documentation menu, t...
Matthew Brooke
05:32 PM Bug #1479: problem with referenced parties in Taxonomic Coverage
DataPackageWizardPlugin deleteExistingAndAddPageDataToDOM() method was working
correctly; however, calling code was p...
Matthew Brooke
03:56 PM Bug #1479: problem with referenced parties in Taxonomic Coverage
"erases referenced subtree" issue due to DataPackageWizardPlugin
deleteExistingAndAddPageDataToDOM() method - this me...
Matthew Brooke
12:31 PM Bug #1479: problem with referenced parties in Taxonomic Coverage
There was a data formatting problem is the publication date field. Java
DataFormat was used to check, but it was not ...
Dan Higgins
11:18 AM Bug #1479: problem with referenced parties in Taxonomic Coverage
Matthew handling "party subpage" issues;
Dan handling "check data field for proper operation".
Watch this space for...
Matthew Brooke
10:35 AM Bug #1479: problem with referenced parties in Taxonomic Coverage
also need to check data field for proper operation! Dan Higgins
10:35 AM Bug #1479 (Resolved): problem with referenced parties in Taxonomic Coverage
Attempting to use references in the party subpage of Taxonomic coverage seems to
corrupt entire package (erases refe...
Dan Higgins
03:50 PM Bug #1482: ReviseQuery cause morpho menu and button dupliate
The bug is fixed. When morpho do revise search, if you changed the query title,
it will update frame title too.
In u...
Jing Tao
10:58 AM Bug #1482 (Resolved): ReviseQuery cause morpho menu and button dupliate
Here is the steps to repoduce the bug:
1) do a search.
2) In search result frame, click ReviseSearch button or menu...
Jing Tao
02:26 PM Bug #1483: Fix validation error message from Metacat to be less criptic
revised the checking of error messages from metacat in Save and Synchronize
classes to detect validation errors and s...
Dan Higgins
12:38 PM Bug #1483 (Resolved): Fix validation error message from Metacat to be less criptic
When there is a validation error from metacat, the long message about where the
xml was invalid should not be shown ...
Dan Higgins
01:19 PM Bug #1454: custom units not inserted into data package
The basic bug does seem to be fixed (i.e. custom unit info is added to the
datapackage, creating a valid eml doc)
Th...
Dan Higgins
12:31 PM Bug #1475: access dialog displays DN instead of Name
access seems to be working now. Any unexpected behaviour should be considered a
bug now.
Saurabh Garg
10:55 AM Bug #88: need ability to manipulate access control lists
Changing milestone back to 1.5 and closing this bug to record that access
control interface was developed for 1.5. H...
Matt Jones
10:31 AM Bug #88: need ability to manipulate access control lists

Morpho now has an Access screen through which you can select the ACL. It uses
JTreeTable and seems to be efficient ...
Saurabh Garg
10:54 AM Bug #1481 (New): access list should support multiple selections in tree
Current access list dialog allows users to select only one person in the user
tree at a time, and set permissions fo...
Matt Jones
10:49 AM Bug #1480 (In Progress): need to display URL references to data where possible
Currently only data files (text and images) created within Morpho can be
displayed by Morpho. We need to examine URL...
Dan Higgins
10:33 AM Bug #1209: Add functionality to EML 2 stylesheets written by Jing so that they can be used by Morpho and make other changes

The stylesheets work fine for Morpho now. I am changing target milestone to v1.6
Thing left to do is to check if sam...
Saurabh Garg
10:33 AM Bug #1464: after choosing a referenced party, nothing shows in the combobox
Not sure that this is appropriate, since the information has been *copied* (not
referenced) from the external package...
Matthew Brooke
10:26 AM Bug #1464: after choosing a referenced party, nothing shows in the combobox
for now, we are doing nothing here. Not sure what the issue is. Dan Higgins
10:32 AM Bug #664: add keyboard shortcuts for menus
added in some places; still need a more comprehensive system Dan Higgins
10:32 AM Bug #664: add keyboard shortcuts for menus
added in some places; still need a more comprehensive system Dan Higgins
10:31 AM Bug #648: Icons on left of search result not clear
no agreement on what would be better Dan Higgins
10:30 AM Bug #1470: Morpho User's Guide Problems
*** Bug 611 has been marked as a duplicate of this bug. *** Dan Higgins
10:30 AM Bug #611: rewrite help documentation
documentation being handled in another bug
*** This bug has been marked as a duplicate of 1470 ***
Dan Higgins
10:29 AM Bug #1272: Issues in New Datapackage Wizard User Interface reported by Andrea
handled elsewhere or not needed Dan Higgins
10:25 AM Bug #1276: Comments on Data Package from Andrea Chadden
Items 1, 2, and 4 are taken care of.
3 can be handled by adding an 'invisible' icon of the proper size to all menu
i...
Dan Higgins

04/12/2004

09:54 PM Bug #1267: data file original name not saved
file name now saved even when not using the Text Import wizard Dan Higgins
06:04 PM Bug #1454: custom units not inserted into data package
this bug seems to be fixed. The problem was due to the wizard creating a
temporary DOM and treating that as the curr...
Perumal Sambasivam
12:19 PM Bug #1454: custom units not inserted into data package
If one immediately (after opening Morpho) edits column metadata in an existing
table and changes to a custom unit, ev...
Dan Higgins
10:53 AM Bug #1454: custom units not inserted into data package
We seem to have regressed on this bug back to the original description! (A few
days ago, AdditionalMetadata was being...
Dan Higgins
03:57 PM Bug #1476: add additional locations for geographic coverage list
added all ucnrs sites on this site: http://www.ucnrs.org/nrs/LatLong.html Chad Berkley
03:06 PM Bug #1476: add additional locations for geographic coverage list
added all lter sites. looking for obfs and nrs coords. Chad Berkley
12:16 PM Bug #1476 (Resolved): add additional locations for geographic coverage list
add more OBFS/NRS/LTER site locations to default locations file. Dan Higgins
02:55 PM Bug #1474: taxon citation screen ok button does nothing
(2) is also fixed. Perumal Sambasivam
02:22 PM Bug #1474: taxon citation screen ok button does nothing
resolved (1). (2) seems to be fixed too (atleast for the cases i tried). Now, I
am not able to reproduce this bug.. ...
Perumal Sambasivam
10:56 AM Bug #1474 (Resolved): taxon citation screen ok button does nothing
1) The "Citation" screen that is accessible from the taxonomic coverage screen
does not work. After entering inform...
Matt Jones
02:36 PM Bug #1381: keyword set editor efficiency problems
after looking into the tab order problems in this dialog and talking with
perumal, it appears to be impossible to cr...
Chad Berkley
02:19 PM Bug #1473: taxon cov info not saved in tree
Fixed. Perumal Sambasivam
10:43 AM Bug #1473 (Resolved): taxon cov info not saved in tree
Creating a new package in the DPW with taxonomic information for 3 species does
not actually save the taxonomic cove...
Matt Jones
02:03 PM Bug #1472: Morpho buttons show up without borders in certain cases.
The Windows problem is only that the button outline does not show up. Button
text shows up Ok so this has only minor ...
Dan Higgins
10:21 AM Bug #1472: Morpho buttons show up without borders in certain cases.
The issue I see on linux is that buttons that are disabled show up without text
inside the button, and the border of ...
Matt Jones
09:51 AM Bug #1472 (New): Morpho buttons show up without borders in certain cases.
Morpho buttons like the login button on the main screen or buttons on the tool
bar don't show up sometimes. This pr...
Saurabh Garg
01:54 PM Bug #1471: Data changes are not being detected (Save problem)
added statements to note changes in the data table so that Save command knows
that data has been changed and Save wil...
Dan Higgins
09:46 AM Bug #1471 (Resolved): Data changes are not being detected (Save problem)
Changes in datatables are not being detected properly by the "Save" command,
making it impossible to save properly (...
Dan Higgins
01:30 PM Bug #1477: organization list hardcoded and wrong for UCNRS
Fixed as proposed. The "<organization>" element in the config.xml file now
lists all organizations that should be in...
Matt Jones
01:28 PM Bug #1477 (Resolved): organization list hardcoded and wrong for UCNRS
The current list of organizations that displays in the profile dialog is wrong
(it lists 'NRS' rather than 'UCNRS')....
Matt Jones
11:52 AM Bug #1475: access dialog displays DN instead of Name

> After adding people to the ACLs, the access dialog can be reopened, but
> instead of properly displaying the name,...
Saurabh Garg
11:00 AM Bug #1475 (Resolved): access dialog displays DN instead of Name
After adding people to the ACLs, the access dialog can be reopened, but instead
of properly displaying the name, org...
Matt Jones
11:50 AM Bug #1424: access control changes not made in package

Done.
Saurabh Garg
11:49 AM Bug #1420: define access dialog needs progress bar

Done.
Saurabh Garg
09:42 AM Bug #1470 (Resolved): Morpho User's Guide Problems
There are several problems with the current Morpho User's Guide:
1) Several images do not appear in the "Creating ...
Dan Higgins
12:05 AM Bug #1463: citation dialog box needs repeating authors
fixed Perumal Sambasivam
12:04 AM Bug #1251: Wizard: Taxonomic Coverage Page
taxon page completed Perumal Sambasivam
12:03 AM Bug #1250: Wizard Attribute Page: allow enumerations to be populated from other tables (eg species lists)
Completed. Perumal Sambasivam

04/11/2004

10:45 AM Bug #1461: dpw not adding role in associatedParty
with Chad's comments on how to reproduce this bug, I was able to figure out how
to fix it! (Dan)
Changed logic in ho...
Dan Higgins

04/09/2004

04:01 PM Bug #1461: dpw not adding role in associatedParty
ok, here are the steps to reproduce this bug:
1) start the dpw
2) enter an owner and contact (or select one from ano...
Chad Berkley
09:24 AM Bug #1461: dpw not adding role in associatedParty
I have been unable to reproduce this bug in several attempts.
Perhaps the fix to Bug 1462 fixed this one?
Dan Higgins
03:42 PM Bug #1465: using references in dpw causes duplicate reference ids
A new ID was not being created when a party reference was edited and copied (as
opposed to editing of the reference i...
Dan Higgins
03:00 PM Bug #1465: using references in dpw causes duplicate reference ids
I can reproduce this bug by 'copying' a reference. Apparently the id is simply
copied also! (Still need to find the a...
Dan Higgins
12:57 PM Bug #1468: using referenced party causes role to be added
This bug was not (directly) due to reference handling, but rather to the code
that builds the list of parties in the ...
Dan Higgins
11:12 AM Bug #1468: using referenced party causes role to be added
HINT: This bug occurs even when there is no reference! It is apparently a bug in
the Edit button call, not in refernc...
Dan Higgins
09:30 AM Bug #1468 (Resolved): using referenced party causes role to be added
When creating a contact the 'role' attribute shows up incorrectly (because
contact doesn't have a role in EML2). To...
Matt Jones

04/08/2004

08:28 PM Bug #1460: Ablity to use TemporalPage.java from attribute or entity level
Coverage subtree is allowed at several locations deeper in the eml hierarchy.
All the coverage subtrees (Temporal, Ge...
Dan Higgins
02:30 PM Bug #1460 (In Progress): Ablity to use TemporalPage.java from attribute or entity level
Temporal Page and hence other screens should be able to be retrieved from lower
down in eml hierarchy. e.g. assigni...
Saurabh Garg
08:22 PM Bug #1462: validation problem when saving to metacat
found bug in the 'insertSubtree' method of the AbstractDataPackage class which
resulted in subtree being inserted aft...
Dan Higgins
05:02 PM Bug #1462: validation problem when saving to metacat
I think there is a bug with the insertion of subtrees when the preceeding
sibling is repeated.
Dan Higgins
04:31 PM Bug #1462: validation problem when saving to metacat
Looks like somehow the project element got inserted between the two contact
elements, causing the error.
Matt Jones
04:26 PM Bug #1462 (Resolved): validation problem when saving to metacat
I created a package in the wizard, added a data table through the "import"
facility, and then saved locally. I then ...
Matt Jones
06:17 PM Bug #1465: using references in dpw causes duplicate reference ids
this bug only seems to happen when you try to use references to include more
than one contact/owner/assocParty. If I...
Chad Berkley
06:13 PM Bug #1465 (Resolved): using references in dpw causes duplicate reference ids
I created a new package with the dpw, and added several
contacts/owners/assocParties from other packages as well as ...
Chad Berkley
06:05 PM Bug #1464 (Resolved): after choosing a referenced party, nothing shows in the combobox
when you choose a party from another dataset in the owner frame of the dpw,
nothing is displayed in the combo box wh...
Chad Berkley
05:04 PM Bug #1463 (Resolved): citation dialog box needs repeating authors
1) The current Citation dialog box that can be reached from the taxonomic
coverage screen does not allow for all of ...
Matt Jones
03:49 PM Bug #1461 (Resolved): dpw not adding role in associatedParty
when i try to validate a package after creating it and using one or more
referenced associatedParties, the package i...
Chad Berkley
02:59 PM Bug #644: MetaView Navigation and Entity/Attribute Links: top versus side display

1) has been fixed. 2-5 is no longer relevant.
Saurabh Garg
02:57 PM Bug #1109: Open button/menu fails immediately after package update
This bug has been fixed as the result of fixing some other errors. Newly saved
packages appear on Open list.
Dan Higgins
02:38 PM Bug #1109: Open button/menu fails immediately after package update
If this is still a bug it needs to be resolved before 1.5 ships. Dan, please
clarify and either fix or close the bug...
Matt Jones
02:57 PM Bug #1424: access control changes not made in package
when you add information using the following menu items under documentation the
changes are not reflected in the mai...
Chad Berkley
02:56 PM Bug #1425: main package screen not getting updated and editing problems
moving the remainder of this bug to 1424
Chad Berkley
02:54 PM Bug #1293: Browsing Data Package Wizard with minimal use of mouse

All the features entered, except for
"In keywords, new entry should be made possible by pressing enter ..."
That h...
Saurabh Garg
02:53 PM Bug #1381: keyword set editor efficiency problems

From Bug# 1293
-> In keywords, new entry should be made possible by pressing enter ...
Saurabh Garg
02:46 PM Bug #1385: date frame has two year fields

Double click in all CustomLists work now.. you can double click on a previous
record to edit it.
The two year fiel...
Saurabh Garg
02:32 PM Bug #1262: Wizard Page: Methods
Done and in DPW now. Saurabh Garg
02:24 PM Bug #1254: Temporal Information Wizard Page for entering Temporal data

A Temporal screen was added. Everything works fine. When eml2.0.1 comes out,
calendarToString() in TemporalPage.jav...
Saurabh Garg
02:10 PM Bug #1459 (New): party editing efficiency additions
this is a continuation of bug 669. Only the relevant, incomplete items from 669
are included here.
1) Collect co...
Chad Berkley
02:05 PM Bug #669: streamline entry for responsible party
matthew has added an extensive framework for pulling party information from
different packages via references. You c...
Chad Berkley
01:55 PM Bug #1438: Text changes: Data Package Wizard Step 14
done Chad Berkley
12:07 PM Bug #1457: taxonomic DPW panel either does not work or needs a better explanation
added a better description on how the panel works. I think the form is ok now. Chad Berkley
12:07 PM Bug #1435: Data Package Wizard Step 12 Text changes
done Chad Berkley
12:06 PM Bug #1430: Text fixes in New DataTable Wizard screen 3
done Chad Berkley
11:21 AM Bug #1429: Text fixes in New DataTable Wizard screen 2
done Chad Berkley
10:42 AM Bug #1428: Text fixes in New DataTable Wizard screen 1
done Chad Berkley
10:10 AM Bug #1458: Out of Memory problems
I discovered the problem here was the LiveMapPanel class and the large world map
image being use to display graphical...
Dan Higgins
10:00 AM Bug #1417: fixes for step 14 of 14
didn't move the text because of layout contraints but I did redo the punctuation
to make it a bit smoother.
Chad Berkley

04/07/2004

04:30 PM Bug #1439: Text changes: Data Package Wizard Step 13
done Chad Berkley
04:02 PM Bug #1436: Text changes: Data Package Wizard Step 12
done Chad Berkley
04:02 PM Bug #1433: Text changes: Data Package Wizard Step 11
done Chad Berkley
04:01 PM Bug #1432: Data Package Wizard Step 10 Text changes
done Chad Berkley
03:53 PM Bug #1458 (Resolved): Out of Memory problems
When checking Morpho memory useage, I discovered that lots of memory seems to
'disappear' and is never recovered whe...
Dan Higgins
03:51 PM Bug #1416: fixes in step 13 of 14
done Chad Berkley
03:31 PM Bug #1413: fixes for step 12 of 14
done Chad Berkley
02:43 PM Bug #1457 (Resolved): taxonomic DPW panel either does not work or needs a better explanation
I've been unable to determine wether I just don't understand what to do with
this panel, or if it doesn't work. The...
Chad Berkley
11:13 AM Bug #1455: Datapackage frame disappears during save
fixed.
Converted SaveDialog to use the UIController method showNewPackage
Dan Higgins
11:12 AM Bug #1455: Datapackage frame disappears during save
fixed.
Converted SaveDialog to use the UIController method showNewPackage
Dan Higgins

04/06/2004

08:04 PM Bug #1455 (Resolved): Datapackage frame disappears during save
If you do a file->save, then choose local and/or network and hit "save", the datapackage display screen
disappears ...
Matthew Brooke
05:35 PM Bug #1410: fix text in step 9 of 14
fixed Chad Berkley
03:50 PM Bug #1409: fix text in step 8 of 14
fixed Chad Berkley
01:17 PM Bug #1453: party editing screen popup hides wizard instructions
implemented solution #1 -- placing focus on the Add button Matthew Brooke
11:57 AM Bug #1453: party editing screen popup hides wizard instructions
I like your solution #1 -- placing focus on the Add button. However, keep in
mind that the screen resolution limits a...
Matt Jones
11:27 AM Bug #1453: party editing screen popup hides wizard instructions
Removing one button click does make the flow marginally quicker - I wouldn't
agree with "much, much easier" though. T...
Matthew Brooke
09:21 AM Bug #1453: party editing screen popup hides wizard instructions
> And I do not believe that the first time user really needs to see instructions
> for filling out a simple name/addr...
Chad Berkley
09:00 AM Bug #1453: party editing screen popup hides wizard instructions
I disagree. It is so much, much easier for the user to have the party dialog
appear automatically than have to click ...
Dan Higgins
01:02 PM Bug #1442: data wizard does not create correct type of data
Wizard pages have been modified so that the complex text choice is disabled for
creating a new data table. Complex te...
Dan Higgins
12:59 PM Bug #1442: data wizard does not create correct type of data
The data table was not written to handle complex text formats of the type
described. Like the text import wizard code...
Dan Higgins
09:05 AM Bug #1408: fix text in step 7 of 14
fixed Chad Berkley
09:03 AM Bug #1424: access control changes not made in package
currently (4/5/2004), the Add button on the access dialog appears to do nothing! Dan Higgins
08:59 AM Bug #1407: fix text in step 6 of 14
fixed Chad Berkley
08:47 AM Bug #1443: sort function only sorts descending
toggle functionality fixed. Dan Higgins
08:45 AM Bug #1454 (Resolved): custom units not inserted into data package
Used the custom unit dialog and examined the resulting data package xml. Custom
unit (incorrectly) inserted as a sta...
Dan Higgins

04/05/2004

10:56 PM Bug #1453: party editing screen popup hides wizard instructions
I brought this up at a meeting, and thought we had decided to do as chad suggested (btu have slept
since then, so ma...
Matthew Brooke
05:14 PM Bug #1453 (Resolved): party editing screen popup hides wizard instructions
When you are cycling through the wizard and you get to the owner and contact
panels, the pary editing panel is autom...
Chad Berkley
05:16 PM Bug #1406: wording in step 5 of 14
fixed. combined both comments below for solution. Chad Berkley
04:47 PM Bug #1382: wording in step 4 of 14 in the wizard
fixed Chad Berkley
04:24 PM Bug #1405: text in page 3 of 14 needs revision
fixed as stated Chad Berkley
04:07 PM Bug #1389: Note in step 1 of 14 needs rewriting
incorporated changes as noted. Chad Berkley
04:04 PM Bug #1445: morpho editor causes validation problem
fixed the code so that the "textFixed" element and the "textDelimited" element
are repeated instead of the "fieldWid...
Perumal Sambasivam
01:19 PM Bug #1445: morpho editor causes validation problem
This problem is created by repeated, sequential <fieldWidth> elements. Actually,
it is the parent of <fieldWidth> tha...
Dan Higgins
11:55 AM Bug #1445: morpho editor causes validation problem
I have been unable to reproduce this error (and especially this error message).
I suspect this is a problem with the...
Dan Higgins
11:23 AM Bug #1445 (Resolved): morpho editor causes validation problem
whenever you open a package with the editor (via the Documentation/Add,Edit
Documentation menu item), whether you ch...
Chad Berkley
11:46 AM Bug #1441: DPW forgets temporal and geo information after hitting back button
temporal and geographic pages fixed (Dan Higgins) Dan Higgins
10:32 AM Bug #1441: DPW forgets temporal and geo information after hitting back button
fixed for party panels (owner & contact). Fix was in WizardContainerFrame.java, so may also have fixed
similar probl...
Matthew Brooke
09:18 AM Bug #1441: DPW forgets temporal and geo information after hitting back button
this also seems to happen with the owners panel (step 5). i think the reason is
different though. This occurs when ...
Chad Berkley
08:54 AM Bug #1441 (Resolved): DPW forgets temporal and geo information after hitting back button
In the geographic and temporal coverage panels of the package wizard, if you hit
the back button, the information is...
Chad Berkley
11:45 AM Bug #1443: sort function only sorts descending
Actually, the sort function is designed to toggle; i.e. first sort descending,
then sort ascending. This does work if...
Dan Higgins
10:44 AM Bug #1443 (Resolved): sort function only sorts descending
The data sort funtion only sorts in a descending fashion. You should have the
choice of whether to sort ascending o...
Chad Berkley
09:40 AM Bug #1442: data wizard does not create correct type of data
It appears that morpho creates a comma delimited file no matter what delimiter
you choose. even if you choose a simp...
Chad Berkley
09:31 AM Bug #1442 (Resolved): data wizard does not create correct type of data
in the data wizard, I told it I wanted to create a complex text format file. I
then told it I wanted 3 fixed width ...
Chad Berkley

04/04/2004

01:48 PM Bug #1434: Wizard problems
Temporal coverage problem is apparently working in latest version.
Font cutoff during resizing not considered a user...
Dan Higgins
01:41 PM Bug #1423: save package dialog problems
Text changed as indicated. Current location is marked with checked and disabled
text boxes. Font changed to match oth...
Dan Higgins
01:34 PM Bug #1422: reopening a package shows only local version
Apparently this bug was fixed when code that incorrectly looked for data in
profile rather than config was corrected.
Dan Higgins
01:25 PM Bug #1247: XML Tree Editor Tuning/Enhancements
items 1) to 3) done
decided NOT to implement custom editors from wizard (4) after some experiments
indicating diffic...
Dan Higgins
01:22 PM Bug #1249: Remove buttons at bottom of datatable display
Done
Any changes in table noted so that user is notified when closing window.
Revert Tab menus added
Dan Higgins
01:20 PM Bug #1358: How to handle multiple repeated delimiters
problem will be fixed when a new eml update includes information of this type. Dan Higgins
01:18 PM Bug #1279: Errors while exiting from the Editor
Item 1 was problem with spaces in path to xsd files - fixed.
It is believed that these problems have been fixed (exc...
Dan Higgins
01:15 PM Bug #1426: closing unsaved package does not close package
changes made to avoid always redisplaying a package after a save. This removes
the problem indicated in error descrip...
Dan Higgins

04/03/2004

09:28 PM Bug #1419: search screen buttons need keyboard equivalent
Keyboard shortcuts implemented. Dan Higgins
08:28 PM Bug #1437: open dialog is not the right size
dialog made wider so that network icon in initially visible, Dan Higgins
08:16 PM Bug #1431: data entry problems
Data entry in the table has been simplified along the lines suggesed. tab and
shift-tab move the selected cell forwar...
Dan Higgins
12:55 PM Bug #1440: Reentering Temporal Coverage display is incorrect
fixed typo that entered start date info rather than end date.
Also fixed to display proper screen (single or range o...
Dan Higgins
 

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