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309 issues   (214 closed — 95 open)

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Bug #1543: create workflow scripting language
Bug #1553: Search Scope for dataset panel
Bug #1556: problems with one-button mouse on Macintosh
Bug #1560: Afer data searching, click actor panel and both actor panel and data panel will be disappeared
Bug #1579: need sub-sampling actor
Bug #1581: "New actor" instantiated from command line application and saving actors in specified libraries
Bug #1584: Load data into relational db
Bug #1585: Load data into relational db
Bug #1586: Query engine implementation for data query in kepler
Bug #1588: create nightly build system
Bug #1589: actor testing system
Bug #1592: describe Sparrow toolkit interface
Bug #1595: Create Advance Query Builder UI
Bug #1606: Update Kepler to work with Version 4.0 of Ptolemy
Bug #1635: Update ant build so that documentation appears for new actors
Bug #1640: change kepler website to the seek wiki style
Bug #1644: Image Display actor enhancements needed
Bug #1660: Add QueryBuilder to the Data Actors
Bug #1690: Lock up of Kepler when trying to open Utilities/Deocatrive menu
Bug #1695: Multi-node EcoGrid search for Kepler
Bug #1697: Create a DarwinCore Actor
Bug #1821: Fix improperly names returnfield
Bug #1826: keyboard binding to enter key on quick search broken
Bug #1829: saving workflow invalidates eml data
Bug #1835: create jni cookbook for creating jni actors
Bug #1837: Second and thrid searches return same resultset for DarwinCore DataSource
Bug #1846: can't resize left pane (actor/data tab section)
Bug #1849: pasting operation pastes directly over copied object
Bug #1900: Documentation system
Bug #1908: GEON datasets wrappers
Bug #1998: Enter in actor search text box causes reset
Bug #1999: Very long delays on first startup of new install
Bug #2009: Provide Cancel for Search Function
Bug #2046: libexpat.dll needs to be copied by installer
Bug #2050: EMLDataSource output as Ptolemy records
Bug #2062: Number of search results in data panel doesn't match the real result
Bug #2067: Configure Ports command causes error with PTII CVS
Bug #2068: Error while building actor tree with PT CVS version
Bug #2111: Add "view data" capability for data sources
Bug #2112: add default data browse heirarchy
Bug #2115: add simple annotation dialog for now
Bug #2124: provide mechanism for user to see available nodes on ecogrid
Bug #2138: need helloworld WF
Bug #2144: fix functionality and GUI issues with query builder
Bug #2192: Improve QuickSearch results from Digir
Bug #2195: Patch to org.ecoinformatics.seek.datasource. to remove unused imports
Bug #2196: Changes to DarwinCoreDataSource.java DarwinCoreMetaDataSpecification.java
Bug #2224: Annotation actor not working correctly from KAR file
Bug #2278: Fix cache file name clash
Bug #2320: Cannot run multiple instances of Kepler simultaneously.
Bug #2325: Actor Library Folders Should Not Be Draggable
Bug #2326: Kepler workflow loading freezes when trying to load actors using a password attribute
Bug #2358: need to add "..." to appropriate menu items
Bug #2383: mnemonics in menus not appearing
Bug #2392: MENUS: Top-Level Menu - need centralized way to remove menubar
Bug #2425: Actor documentation retains information for deleted ports
Bug #2440: Saving Workflow
Bug #2441: Actor port positions not maintained following kar library build
Bug #2513: Some actors not included in 'ant generateDoc' target
Bug #2561: context menu of attributes
Bug #2685: confused about the MOML file
Bug #2726: Wrong R working directory in specialized R actors
Bug #2755: generateDocs replaces & with & erroneously
Bug #2934: File Writer prints an extra line of output to System.out
Bug #3173: Improve data frame handling between RExpression actors
Bug #3185: Ctrl-z does not "undo" in RExpression actor
Bug #3186: commit RExpression code changes, but leave actor open
Bug #3213: R expression actor introduces leading/trailing whitespace
Bug #3214: R actor does not handle single quotes in character string data
Bug #3247: Documentation intro screen typo
Bug #3252: Ptolemy ack in installer splash screen has typos and was outdated
Bug #3255: Diva ConcurrentModificationException
Bug #3268: Python/PythonFileLineCounter.xml workflow problem
Bug #3312: DataTurbine (formerly RBNBToKepler) actor - error with empty server
Bug #3324: RExpression actor doesn't output properly with >1 dataframe output port
Bug #3339: directory param Browse button for External Execution actor doesn't work properly
Bug #3349: RExpression getUniqueFileName functionality is broken
Bug #3449: Parsing exception with escaped characters in MoML,
Bug #3451: RExpression actor can get typing wrong for incoming numeric vector /array on first workflow run
Bug #3489: The result of last iteration of composite distributed execution doesn't display.
Bug #3543: org.ecoinformatics.seek.R.RExpression
Bug #3547: CollectionReader actor throws exception when input file contains Metadata or Parameter elements
Bug #3714: Support for environment variable in Kepler.
Bug #3722: parameters cannot be dragged onto the canvas
Bug #3738: File -> Save As menu item is missing
Bug #3769: Problem with DistributedCompositeActor
Bug #3771: ant update error
Bug #3901: unescaped & in <entity name="a & b"> on line 4
Bug #3909: RExpression fails with certain port names
Bug #3912: RExpression actor has a single line text entry field
Bug #3968: XSLTActor temporary file bug
Bug #3970: XSLT unnecessarily writes to a file
Bug #3985: Types resolved to unacceptable types
Bug #4022: undesired file:\ prefix added by FileParameter
Bug #4025: XSLTActor accepts StringToken as input
Bug #4029: missing dependency for tools.jar in windows
Bug #4033: Can't compile, MakeKars not found
Bug #4038: The first time ant change-to is run, it prints a stack trace
Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
Bug #4086: Port-Parameters half-work with composite actors
Bug #4092: record all files referred to in array tokens
Bug #4109: File Reader error message incorrect
Bug #4120: Bug in OpenDBConnector actor
Bug #4123: Image reader can't read URL
Bug #4125: ReportTest does not compile
Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21
Bug #4142: EML 2 Dataset caches restricted datasets, allows access across sessions
Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
Bug #4183: Kepler gives error on command+Q
Bug #4184: EML 2 Dataset disregarding selectedEntity from XML
Bug #4187: When running with reporting suite, a blank canvas is considered changed and unsaved
Bug #4215: Error when check out provenance with change-to
Bug #4267: RExpression converts nil input into "NA"
Bug #4270: RExpression exports special characters in strings as the 2 character escaped sequence
Bug #4271: RExpression fails when options(echo = FALSE) is set
Bug #4272: RExpression cannot handle irregular Record tokens
Bug #4313: Workflow Run Manager - duplicate rows shown for same execution
Bug #4318: RExpression NA converts to string "nil", not value nil
Bug #4350: Integrity constraint violation - no parent SYS_FK_59 table - during _first_ startup
Bug #4351: ant netbans fails due to missing file
Bug #4370: Changes to Components and Data Preferences disappear on relaunch
Bug #4408: Kar upload to repository tries to insert twice
Bug #4424: KeplerLSID should implement hashCode
Bug #4440: null pointer exception on viewing report when workflow has not been run
Bug #4446: serialized workflowRuns should have use a date standard
Bug #4450: Saving workflow in Windows 7
Bug #4482: JRE Exception Access Violations
Bug #4506: Exception is thrown during workflow execution
Bug #4511: There are 2 toolbars in the Kepler main window
Bug #4522: Folder not found in library index
Bug #4523: apply button while editing ports acts like commit
Bug #4530: changing a KAR outside of a Kepler session fails without a clean-cache
Bug #4534: add extra space before section headers when BREAK_BEFORE is false
Bug #4540: authentication problems with dev.nceas.ucsb.edu
Bug #4545: String To Image Converter seems broken
Bug #4560: can't remove local repositories
Bug #4562: report seems to exist in MOML workflows when kar of same name exists in a local repository
Bug #4563: components search seems to be broken
Bug #4565: clean wrp checkout has no actors
Bug #4567: NPE viewing LSID of non-workflow entries in local repositories
Bug #4568: must have some way to view full path to port in report
Bug #4572: ROML lost when reported ports are in composite actors
Bug #4592: ROML lost when saving KAR a second time
Bug #4593: ROML lost when saving workflow with a composite actor to KAR after saving XML after saving to KAR
Bug #4596: selecting text entry box of report item moves activation highlight but does not update properties window
Bug #4598: particular workflow triggers "QueryException: No tokens found for execution"
Bug #4608: ROML in KAR files not being shown at all
Bug #4615: pdfs missing from run archives
Bug #4626: NPE when saying "yes" to adding a semantic type while saving a KAR
Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
Bug #4638: ant clean-all no longer works
Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
Bug #4653: error message says "data cloumn"
Bug #4654: searching KNB through Kepler returns many console errors and caching fails
Bug #4655: data packages are suddenly unusable
Bug #4705: ant change-to -Dsuite=wrp gives error
Bug #4709: error updating ptolemy/src
Bug #4710: RExpression fails to convert arrayType(niltype)
Bug #4714: Adding actor documentation does not increment LSID
Bug #4715: Eclipse metadata in webservice module breaks eclipse project import
Bug #4727: Cannot compile Ptolemy from IntelliJ
Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
Bug #4789: multiport input to composite actor seems to only pass first token
Bug #4795: RExpression & cache cleaning
Bug #4804: copy/paste relation changes width from Auto to 1
Bug #4806: add output port to Throw Exception
Bug #4808: ant clean-cache fails, NoClassDefFoundError, org/apache/commons/logging/LogFactory
Bug #4809: Kepler storing authenticated search results
Bug #4810: [right click]->Save Archive (KAR) on composite actor borks port attributes
Bug #4812: local repository KAR [right click]->Delete fails when file does not exist
Bug #4815: Need a target to build kepler-styles.jar
Bug #4827: RExpression does not handle matrix tokens correctly.
Bug #4831: Kepler (trunk) couldn't save a workflow to a remote repository as kar file
Bug #4846: error opening kar from local repository
Bug #4870: searching for packages with the same name from multiple sources sometimes loses results
Bug #4872: listen to director throws error
Bug #4879: RExpression replaces ) in string vectors with } when outputting to a port
Bug #4880: RExpression cannot output matrix of strings
Bug #4881: RExpression outputs [false] for any matrix of booleans
Bug #4885: Right-clicking on KARs in the component pane produces exception
Bug #4887: If a module is added to a configuration, the error message should include the fix
Bug #4909: Actor documentation: updates ignored, duplicate info, how to refer to other actors/models?
Bug #4913: ant change-to -Dsuite=kepler-2.0 checks out ptolemy from the head not the rel-8-0-beta-2 branch
Bug #4925: Components search occasionally shows different results
Bug #4930: Failing to download a dependent module still indicates success
Bug #4934: Certain non-user triggered actor icon changes are not reflected immediately in the zoom widget
Bug #4967: Disallow dragging romls, workflowRuns, etc onto canvas
Bug #4974: ant run and ant force-ptolemy fail to compile an updated file
Bug #4989: The installer should offer to start Kepler
Bug #4990: Ptolemy documentation missing
Bug #4991: Kepler-2.0-RC2 fails to start for a non-admin user after admin install
Bug #4992: In a shared installation, how does the user get the demo?
Bug #4993: Kepler-2.0 cannot be built under windows because of apple-extensions
Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
Bug #4995: ant installer fails under Linux
Bug #4996: 2.0-RC2 demos don't work
Bug #5012: highlighted OK button in 'Annimate at runtime ...' menu item does not work.
Bug #5022: 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
Bug #5027: Users should be able to build installers for the Kepler-2.0 branch
Bug #5036: All workflows that do not work should be moved.
Bug #5064: Kepler 2.1 Tracking Bug
Bug #5066: Fix for ImageJ so that preferences are stored in an area other than the installation space. This may require a change to ImageJ source code.
Bug #5092: 2.0 user manual has no table of contents
Bug #5122: Develop an approval process for patches
Bug #5123: Create an ant task to display commits since last patch of a given module
Bug #5124: Add/fix the ability to patch a suite
Bug #5137: database exception when using 'ant run' at windows 7.
Bug #5140: Ecogrid Authentication Error at Kepler trunk on windows 7.
Bug #5148: Remove println from XSLTActor
Bug #5149: kar file saving problems.
Bug #5150: errors to save an actor as kar if its name has forward slash ('/').
Bug #5151: kar files are not openable if they are generated from actors.
Bug #5152: Errors when saving more than one actors in a kar.
Bug #5162: Kepler quits with JVM error (no use-case for reproducing error)
Bug #5163: Items of Interest pane in reporting cannot be used when a sensor site is executing
Bug #5168: 'ant change-to' fails at r25610
Bug #5177: Enhance displaying workflow in kepler server library skin
Bug #5187: GUI should make apparent unsaved changes
Bug #5189: When File -> Exit is choosen Kepler closes all workflows without warning
Bug #5192: Module Manager reacts badly to dot files in resources/configuration directory
Bug #5195: Help | Module Documentation is empty
Bug #5203: Kepler wont start
Bug #5229: Poor component search performance
Bug #5230: saving workflow that has instances of user created class to a KAR gives errors
Bug #5250: confusing ant options.
Bug #5258: kepler start exception when soft links are in KeplerData/workflows/MyWorkflows
Bug #5260: Problems with unknown free-form tags
Bug #5265: Kepler 2.1.0 has omitted the Publish & subscribe actors from Ptolemy
Bug #5267: Changing a ptolemy.kernel.util.Attribute in Kepler gui doesn't work
Bug #5268: Dragging modified version of Sinewave actor to canvas causes gui oddity
Bug #5269: Selectordialog and Case actors do not work well together
Bug #5270: No menu bar and labels when non-default locale is set
Bug #5271: No-gui mode needs a way to access private data source
Bug #5278: HSQL database is shared between users
Bug #5285: NPE on restart using newly created suite
Bug #5289: Change report instance margins from transparent to white
Bug #5298: rendered west and east dynamic item label problems
Bug #5299: can't drag using report designer item icons
Bug #5304: Report designer - make "+ Get Image..." button much smaller
Bug #5305: Report designer - make north and south dynamic item labels left justified
Bug #5306: Report designer - make dynamic report item label textfields smaller
Bug #5307: Report designer - fix drag and drop outline sizes
Bug #5314: Closing last workflow window closes Kepler application
Bug #5327: Need to fix documentation system
Bug #5329: Workflow Run Manager - launch Provenance Browser from run-row
Bug #5336: If a user chooses "no metadata" as output format in Database Query actor, the query result only shows one column no matter the query specifies to select two or more columns
Bug #5338: In Database Query actor, the output behavior will be different if there is no result set found when you check or uncheck outputEachRowSeparately
Bug #5339: In Database Query actor, the output port will be string type if you choose the output type to be "record"
Bug #5340: Miss a dollar sing ($) when an actor references a parameter.
Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
Bug #5344: Kepler ships open source software and needs to include license files
Bug #5345: Kepler 2.2rc3 Copyright should be updated to 2011
Bug #5350: Kepler doesn't close completely
Bug #5351: Couldn't open a composite actor at the second time
Bug #5357: invocation problems with Distributed Composite Actor Options dialog
Bug #5358: CompositeActor name can disappear
Bug #5361: Animate at Runtime broken
Bug #5380: Save As no longer disposes old window
Bug #5381: run-workflow does not work for KAR files
Bug #5401: Workflow archiving dataturbine data to metacat should check the last archiving time through repository
Bug #5419: Cannot open KARs saved in 2.1.0 suites in 2.2.0 in relaxed mode because ptolemy module changed names
Bug #5423: Put kepler-server war file and kepler executatlbe as part of normal installation procedure
Bug #5435: passing string into a parameter for headless execution doesn't work
Bug #5438: missed menubar and misformed buttons without text
Bug #5445: Kepler 2.2.0 tar file should create a kepler-2.2.0 directory
Bug #5449: Running ant should include instructions about updating kepler-tasks.jar
Bug #5450: Menu: Help -> Kepler Documentation causes IllegalArgumentException
Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Bug #5454: DEBUG->ANIMATE EXECUTION error message
Bug #5459: Kepler 2.3 blocking bug
Bug #5474: Make the eml actor on kepler handle multiple physical representations in an entity
Bug #5482: Module manager should run patch checker before restart
Bug #5483: Another Kepler GUI will nuke the ~/.kepler/cache generated by the kepler in workflow run engine
Bug #5511: If Kepler-2.2 is running, then opening a .kar in Kepler trunk produces exceptions
Bug #5512: Provenance module does not work with MySQL (RecordingException: com.mysql.jbc MysqlDataTruncation)
Bug #5538: Eclipse uses different .class files from ant run
Bug #5539: Open Actor does not find the actor source code when Kepler is invoked from within Eclipse
Bug #5540: Automate Layout no longer uses Kieler on trunk
Bug #5541: Kepler crashes on startup with NoClassDefFoundError
Bug #5554: Build system doesn't recompile using dependencies by default
Bug #5555: Add reverse index in ArrayElement
Bug #5556: Add key bind to GUI to avoid connecting edge prematurely
Bug #5557: Replace hardcoded path separator with File.pathSeparator
Bug #5558: Add kepler-tasks target to build.xml and use depend in kepler-tasks.xml
Bug #5559: Curation Package User Manual PDF
Bug #5584: Create a Date To Long actor
Bug #5585: Add date format E MMM d HH:mm:ss zzz yyyy to DateToString
Bug #5593: use setDefaultWidth in actors
Bug #5596: Kepler UI freezes after Login Anonymously
Bug #5611: LinearModel actor doesn't handle input variables properly
Bug #5612: String index out of range in R actor
Bug #5614: Build system should not require svn binary
Bug #5628: possible to get NPE when right-clicking on kar in Components tree
Bug #5639: ant update ptolemy -Drev=stable doesn't update you to latest "stable"
Bug #5667: reevaluate how opening kars vs. XML should work from actor library.
Bug #5670: see if runtimemonitor module can be deleted, contains duplicate code
Bug #5671: Workflow Run Manager tries to connect to keplerDevRepository as a database instead of kar store
Bug #5672: java -jar sensorview-utils-1.0.jar should invoke a simple java app that prints help
Bug #5673: if user has newer version of module than exists in repository, old version will be downloaded
Bug #5674: The patch downloader dialog can fail to automatically restart Kepler
Bug #5690: problems with updateActorDocs
Bug #5692: Values not committed to actors
Bug #5693: decide on issuing patches so older versions of kepler can upload accessible items to Metacats > 2.0
Bug #5695: more automatic module update process.
Bug #5697: Workflow Run Manager can fail to Force Open a run kar that Kepler can
Bug #5721: Add ModelRepaintController to the Kepler library
Bug #5724: Display actor's suppressBlankLines parameter not working
Bug #5834: Fix Kepler Javadoc warnings
Bug #5890: kepler crash on mac when clinking 'KeplerData' during saving process.